Gene: AT5G15630 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G15630
Transcript Identifier
AT5G15630.1
Gene Type
Coding gene
Location
Chr5 : 5084842-5086545 : positive

Family

Gene family
HOM04M000577
(214 genes in 27 species)
specific family
Subfamily
ORTHO04M000568
(176 genes in 27 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
Curated Summary
Encodes a member of the COBRA family, similar to phytochelatin synthetase. Involved in secondary cell wall biosynthesis. Mutants make smaller plants with reduced levels of cellulose and cell wall sugars.
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Identifiers

Type Value
AliasCOBL4,COBRA-LIKE4
full_nameIRREGULAR XYLEM 6
symbolIRX6
tidAT5G15630.1
UniProtQ9LFW3

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0010215 IEAUniProtcellulose microfibril organization1
GO:0016049 IEAUniProtcell growth1
GO:0009834 IMPGene Ontologyplant-type secondary cell wall biogenesis1
GO:0050832 IEAPLAZA Tree-based Orthologydefense response to fungusAT5G60950
GO:0010214 IEAPLAZA Tree-based Orthologyseed coat developmentAT3G29810
GO:0048354 IEAPLAZA Tree-based Orthologymucilage biosynthetic process involved in seed coat developmentAT3G29810
GO:0009825 IEAPLAZA Tree-based Orthologymultidimensional cell growthAT5G60920
GO:0052324 IEAPLAZA Tree-based Orthologyplant-type cell wall cellulose biosynthetic processAT3G29810
GO:0009832 IEAPLAZA Tree-based Orthologyplant-type cell wall biogenesisAT3G29810
GO:0009664 IEAPLAZA Tree-based Orthologyplant-type cell wall organizationAT3G29810
GO:0048316 IEAPLAZA Tree-based Orthologyseed developmentAT3G29810
GO:0009651 IEAPLAZA Tree-based Orthologyresponse to salt stressAT5G60920

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0031225 IEA, TAS, UniProtanchored component of membrane1
GO:0005886 IDA, ISMGene Ontologyplasma membrane1 2
GO:0005774 IDAGene Ontologyvacuolar membrane1
GO:0046658 IEAPLAZA Tree-based Orthologyanchored component of plasma membraneAT3G29810
GO:0009505 IEAPLAZA Tree-based Orthologyplant-type cell wallAT5G60920
GO:0005794 IEAPLAZA Tree-based OrthologyGolgi apparatusAT3G29810
GO:0009930 IEAPLAZA Tree-based Orthologylongitudinal side of cell surfaceAT5G60920

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR006918COBRA, plant

Mapman id Description
21.1.2.2.Cell wall organisation.cellulose.cellulose-hemicellulose network assembly.regulatory protein (COB)
No SignalP domains detected for this gene.