Gene: AT5G15550 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G15550
Transcript Identifier
AT5G15550.1
Gene Type
Coding gene
Location
Chr5 : 5059051-5062003 : negative

Family

Gene family
HOM04M004833
(39 genes in 29 species)
specific family

Descriptions

Description
Transducin/WD40 repeat-like superfamily protein
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Identifiers

Type Value
AliasAtPEP2,Arabidopsis thaliana pescadillo ortholog,atPEIP2
tidAT5G15550.1
UniProtQ9LF27

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0042254 IEAInterProribosome biogenesis
GO:0000460 IBAGene Ontologymaturation of 5.8S rRNA1
GO:0000463 IEAGene Ontologymaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)1
GO:0000466 IEAGene Ontologymaturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)1
GO:0000470 IBAGene Ontologymaturation of LSU-rRNA1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515 IPI, IEAGene Ontologyprotein binding1 2
GO:0000166 ISSGene Ontologynucleotide binding1
GO:0043021 IEAGene Ontologyribonucleoprotein complex binding1

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 ISMGene Ontologynucleus1
GO:0005654 IEAGene Ontologynucleoplasm1
GO:0005730 IDA, IEAGene Ontologynucleolus1 2
GO:0005834 ISSGene Ontologyheterotrimeric G-protein complex1
GO:0030687 IBA, IEAGene Ontologypreribosome, large subunit precursor1 2
GO:0070545 IBAGene OntologyPeBoW complex1
GO:0080008 ISSGene OntologyCul4-RING E3 ubiquitin ligase complex1
GO:0005829 RCAGene Ontologycytosol1
GO:0009506 IDAGene Ontologyplasmodesma1

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR028599WD repeat WDR12/Ytm1
IPR012972NLE
IPR001680WD40 repeat
IPR020472G-protein beta WD-40 repeat
IPR019775WD40 repeat, conserved site
IPR017986WD40-repeat-containing domain

Mapman id Description
17.1.2.2.1.10.3.Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU processome.pre-60S ribosomal subunit nuclear assembly.PES-BOP1-WDR12 (PeBoW) complex.component WDR12
No SignalP domains detected for this gene.