Gene: AT5G13010 (Arabidopsis thaliana)

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Gene Identifier
AT5G13010
Transcript Identifier
AT5G13010.1
Gene Type
Coding gene
Location
Chr5 : 4122747-4128660 : positive

Family

Gene family
HOM04M000117
(742 genes in 29 species)
specific family
Subfamily
ORTHO04M005403
(41 genes in 27 species)
specific family

Descriptions

Description
RNA helicase family protein
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Identifiers

Type Value
AliasCUV,CLUMSY VEIN,PRP16,homolog in yeast PRP16
full_nameembryo defective 3011
symbolEMB3011
tidAT5G13010.1
UniProtF4K2E9

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009793 IMP, NAS, UniProtembryo development ending in seed dormancy1 2 3
GO:0008380 IMPUniProtRNA splicing1 2
GO:0010051 IMPUniProtxylem and phloem pattern formation1 2
GO:0048767 IGIUniProtroot hair elongation1 2
GO:0009817 IMPUniProtdefense response to fungus, incompatible interaction1 2
GO:0031053 IMPUniProtprimary miRNA processing1 2
GO:0031334 IGIGene Ontologypositive regulation of protein complex assembly1 2
GO:0010467 IMPUniProtgene expression
GO:0000398 IMPUniProtmRNA splicing, via spliceosome
GO:0033120 IMPUniProtpositive regulation of RNA splicing
GO:0006355 IEAUniProtregulation of transcription, DNA-templated
GO:0016246 IMPUniProtRNA interference
GO:0048364 IMPUniProtroot development
GO:0006351 IEAUniProttranscription, DNA-templated

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004386 IEAInterProhelicase activity
GO:0003676 IEAInterPronucleic acid binding
GO:0005524 IEAUniProtATP binding
GO:0003724 ISSGene OntologyRNA helicase activity1
GO:0004004 IBAUniProtATP-dependent RNA helicase activity1
GO:0003723 IBAUniProtRNA binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IDA, ISM, UniProtnucleus1 2 3
GO:0005681 IBAUniProtspliceosomal complex1
GO:0005737 IBAUniProtcytoplasm1

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001650Helicase, C-terminal
IPR007502Helicase-associated domain
IPR011545DEAD/DEAH box helicase domain
IPR011709Domain of unknown function DUF1605
IPR014001Helicase superfamily 1/2, ATP-binding domain
IPR027417P-loop containing nucleoside triphosphate hydrolase

Mapman id Description
16.4.7.1.6.RNA processing.pre-mRNA splicing.spliceosome assembly and disassembly.RNA helicase activities.RNA helicase (Prp16)
No SignalP domains detected for this gene.