PLAZA 4.0 Monocots gene overview : AT5G12870

Gene: AT5G12870 (Arabidopsis thaliana)

Overview

Gene Identifier: AT5G12870
Transcript Identifier: AT5G12870.1
Gene Type: Coding gene
Location: Chr5 : 4062939-4064939 : negative

Family

Gene family: HOM04M000010
(3187 genes in 28 species)
specific family

Descriptions

Description: myb domain protein 46

Curated Summary: Encodes MYB46, member of the R2R3 factor gene family. Modulates Disease Susceptibility to Botrytis cinerea.

Identifiers

Type	Value
Alias	ATMYB46,MYB DOMAIN PROTEIN 46
symbol	MYB46
tid	AT5G12870.1
UniProt	Q9LXV2

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006351	IEA	UniProt	transcription, DNA-templated	1
GO:0006355	ISS	Gene Ontology	regulation of transcription, DNA-templated	1
GO:0006357	IBA	UniProt	regulation of transcription from RNA polymerase II promoter	1
GO:0030154	IBA	UniProt	cell differentiation	1
GO:0009751	IEP	UniProt	response to salicylic acid	1
GO:0009834	IMP	UniProt	plant-type secondary cell wall biogenesis	1
GO:0050832	IMP	UniProt	defense response to fungus	1
GO:0045893	IDA	UniProt	positive regulation of transcription, DNA-templated	1
GO:2000652	IMP	UniProt	regulation of secondary cell wall biogenesis	1
GO:1901348	IMP	UniProt	positive regulation of secondary cell wall biogenesis	1 2

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	ISS, IEA	Gene Ontology	DNA binding	1
GO:0000981	IBA	UniProt	RNA polymerase II transcription factor activity, sequence-specific DNA binding	1
GO:0001135	IBA	UniProt	transcription factor activity, RNA polymerase II transcription factor recruiting	1
GO:0044212	IBA	UniProt	transcription regulatory region DNA binding	1
GO:0003700	IDA, ISS,	UniProt	transcription factor activity, sequence-specific DNA binding	1 2
GO:0043565	IPI	UniProt	sequence-specific DNA binding	1 2

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IDA, ISM,	UniProt	nucleus	1 2

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox domain-like

Mapman id	Description
15.5.2.1	.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)

No SignalP domains detected for this gene.