Gene: AT5G12330 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G12330
Transcript Identifier
AT5G12330.1
Gene Type
Coding gene
Location
Chr5 : 3987677-3989074 : negative

Family

Gene family
HOM04M000833
(160 genes in 27 species)
specific family
Subfamily
ORTHO04M000717
(154 genes in 27 species)
specific family

Descriptions

Description
Lateral root primordium (LRP) protein-like protein
Curated Summary
A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Expressed in lateral root primordia and induced by auxin. SWP1 is involved in the repression of LRP1 via histone deacetylation.
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Identifiers

Type Value
full_nameLATERAL ROOT PRIMORDIUM 1
symbolLRP1
tidAT5G12330.1
UniProtQ94CK9

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009734 IEAUniProtauxin-activated signaling pathway1
GO:0009851 IEAUniProtauxin biosynthetic process1
GO:0009733 IEPUniProtresponse to auxin1
GO:0048364 IMPUniProtroot development1
GO:0009938 IEAPLAZA Tree-based Orthologynegative regulation of gibberellic acid mediated signaling pathwayAT5G66350
GO:0009739 IEAPLAZA Tree-based Orthologyresponse to gibberellinAT5G66350
GO:0010252 IEAPLAZA Tree-based Orthologyauxin homeostasisAT3G51060
GO:0048467 IEAPLAZA Tree-based Orthologygynoecium developmentAT1G75520
GO:0009299 IEAPLAZA Tree-based OrthologymRNA transcriptionAT1G19790
GO:0045893 IEAPLAZA Tree-based Orthologypositive regulation of transcription, DNA-templatedAT3G51060
GO:0010051 IEAPLAZA Tree-based Orthologyxylem and phloem pattern formationAT3G51060
GO:0048479 IEAPLAZA Tree-based Orthologystyle developmentAT3G51060
GO:0009740 IEAPLAZA Tree-based Orthologygibberellic acid mediated signaling pathwayAT5G66350
GO:0048480 IEAPLAZA Tree-based Orthologystigma developmentAT3G51060

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677 IEAUniProtDNA binding1
GO:0046872 IEAUniProtmetal ion binding1
GO:0042803 IDA, IPI, UniProtprotein homodimerization activity1 2
GO:0003700 IEAPLAZA Tree-based Orthologytranscription factor activity, sequence-specific DNA bindingAT5G66350
GO:0046982 IEAPLAZA Tree-based Orthologyprotein heterodimerization activityAT3G51060

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005575 NDGene Ontologycellular_component1
GO:0005634 ISSUniProtnucleus

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR007818SHI protein family
IPR006510Zinc finger, lateral root primordium type 1
IPR006511SHORT INTERNODES, C-terminal

Mapman id Description
15.5.47.RNA biosynthesis.transcriptional regulation.transcription factor (SRS)
No SignalP domains detected for this gene.