Gene: AT5G11060 (Arabidopsis thaliana)

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Gene Identifier
AT5G11060
Transcript Identifier
AT5G11060.1
Gene Type
Coding gene
Location
Chr5 : 3510408-3512967 : positive

Family

Gene family
HOM04M000332
(326 genes in 29 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
homeobox protein knotted-1-like 4
Curated Summary
A member of Class II KN1-like homeodomain transcription factors (together with KNAT3 and KNAT5), with greatest homology to the maize knox1 homeobox protein. Expression regulated by light. Detected in all tissues examined, but most prominent in leaves and young siliques. Transient expression of GFP translational fusion protein suggests bipartite localization in nucleus and cytoplasm. KNAT4 promoter activity showed cell-type specific pattern along longitudinal root axis; GUS expression pattern started at the elongation zone, predominantly in the phloem and pericycle cells, extending to endodermis toward the base of the root.
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Identifiers

Type Value
full_nameKNOTTED1-like homeobox gene 4
symbolKNAT4
tidAT5G11060.1
UniProtP48001

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355 IEAGene Ontologyregulation of transcription, DNA-templated1
GO:0009416 IEPUniProtresponse to light stimulus1
GO:0009727 IEAPLAZA Integrative Orthologydetection of ethylene stimulusAT4G32040
GO:0071369 IEAPLAZA Integrative Orthologycellular response to ethylene stimulusAT4G32040
GO:0071345 IEAPLAZA Integrative Orthologycellular response to cytokine stimulusAT5G25220
GO:0009722 IEAPLAZA Integrative Orthologydetection of cytokinin stimulusAT5G25220

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677 IEAUniProtDNA binding1
GO:0003700 ISSUniProttranscription factor activity, sequence-specific DNA binding1
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT5G25220
GO:0043565 IEAPLAZA Homology (enrichment)sequence-specific DNA binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IDA, ISM, NAS, IEA, UniProtnucleus1 2 3
GO:0005737 NASGene Ontologycytoplasm1
GO:0005829 IDAUniProtcytosol1

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR008422Homeobox KN domain
IPR005539ELK domain
IPR005541KNOX2
IPR005540KNOX1
IPR001356Homeobox domain
IPR009057Homeobox domain-like

Mapman id Description
15.5.3.4.RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (KNOX)
No SignalP domains detected for this gene.