Gene: AT5G09790 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G09790
Transcript Identifier
AT5G09790.1
Gene Type
Coding gene
Location
Chr5 : 3039204-3040970 : negative

Family

Gene family
HOM04M002480
(65 genes in 27 species)
specific family

Descriptions

Description
TRITHORAX-RELATED PROTEIN 5
Curated Summary
Encodes a SET-domain protein, a H3K27 monomethyltransferases required for chromatin structure and gene silencing. Regulates heterochromatic DNA replication. Contains a PCNA-binding domain. ATXR5 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression. A plant line expressing an RNAi construct directed against this gene has reduced agrobacterium-mediated tumor formation.
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Identifiers

Type Value
AliasPDE336,PIGMENT DEFECTIVE 336,SDG15,SETDOMAIN GROUP 15
full_nameARABIDOPSIS TRITHORAX-RELATED PROTEIN 5
symbolATXR5
tidAT5G09790.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355 ISSGene Ontologyregulation of transcription, DNA-templated1
GO:0009555 IMPUniProtpollen development1
GO:0051726 IEPUniProtregulation of cell cycle1
GO:0009294 IMPUniProtDNA mediated transformation1
GO:0070734 IDAUniProthistone H3-K27 methylation1
GO:0006275 IGIUniProtregulation of DNA replication1
GO:0009901 IEAPLAZA Tree-based Orthologyanther dehiscenceAT5G24330

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515 IPI, IEAGene Ontologyprotein binding1
GO:0003677 ISSGene OntologyDNA binding1
GO:0008270 IEAGene Ontologyzinc ion binding1
GO:0046976 IDAUniProthistone methyltransferase activity (H3-K27 specific)1
GO:0046872 IEAUniProtmetal ion binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IDA, ISM, UniProtnucleus1 2
GO:0009507 IDAUniProtchloroplast1

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR019787Zinc finger, PHD-finger
IPR001214SET domain
IPR019786Zinc finger, PHD-type, conserved site
IPR001965Zinc finger, PHD-type
IPR011011Zinc finger, FYVE/PHD-type

Mapman id Description
12.3.3.6.Chromatin organisation.histone modifications.histone lysine methylation.class IV histone methyltransferase
No SignalP domains detected for this gene.