Gene: AT5G08450 (Arabidopsis thaliana)

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Gene Identifier
AT5G08450
Transcript Identifier
AT5G08450.1
Gene Type
Coding gene
Location
Chr5 : 2727970-2732572 : negative

Family

Gene family
HOM04M002904
(57 genes in 29 species)
specific family

Descriptions

Description
zinc finger CCCH domain protein
Curated Summary
Component of histone-deacetylase complexes. Interacts with HDA6 and HDA19 and facilitates histone deacetylation. Several salt-inducible genes are de-repressed in hdc1 mutants. Mutants are hypersensitive to ABA during germination, grow less and flower later than wildtype. HDC1-overexpressing plants display opposite phenotypes.
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Identifiers

Type Value
AliasHDC1,Histone Deacetylation Complex 1,RXT3-like,RXT3-like
tidAT5G08450.1
UniProtQ8RWV9

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0016575 IDA, IEAGene Ontologyhistone deacetylation1 2
GO:0009737 IMPGene Ontologyresponse to abscisic acid1 2
GO:0009845 IMPGene Ontologyseed germination1 2
GO:0009908 IMPGene Ontologyflower development1 2
GO:0080186 IMPGene Ontologydevelopmental vegetative growth1 2
GO:1902074 IMPGene Ontologyresponse to salt1 2

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515 IPIGene Ontologyprotein binding1 2

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IDA, ISMGene Ontologynucleus1 2 3

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR004043LCCL domain
IPR013951Histone deacetylation protein Rxt3

Mapman id Description
12.3.2.4.5.Chromatin organisation.histone modifications.histone deacetylation.SNL-HDA19 histone deacetylase complex.associated component HDC1/Rxt3
No SignalP domains detected for this gene.