PLAZA 4.0 Monocots gene overview : AT5G07990

Gene: AT5G07990 (Arabidopsis thaliana)

Overview

Gene Identifier: AT5G07990
Transcript Identifier: AT5G07990.1
Gene Type: Coding gene
Location: Chr5 : 2560437-2562859 : positive

Family

Gene family: HOM04M000004
(4272 genes in 29 species)
specific family
Subfamily: ORTHO04M000155
(388 genes in 27 species)
specific family

Descriptions

Description: Cytochrome P450 superfamily protein

Curated Summary: Required for flavonoid 3' hydroxylase activity. Enzyme abundance relative to CHS determines Quercetin/Kaempferol metabolite ratio.

Identifiers

Type	Value
Alias	CYP75B1,CYTOCHROME P450 75B1,D501
full_name	TRANSPARENT TESTA 7
symbol	TT7
tid	AT5G07990.1
UniProt	Q9SD85

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0055114	IEA	Gene Ontology	oxidation-reduction process	1
GO:0009813	IEA, TAS,	UniProt	flavonoid biosynthetic process	1 2
GO:0044550	IBA	UniProt	secondary metabolite biosynthetic process	1
GO:0009411	IEP	Gene Ontology	response to UV	1
GO:0009733	IEP	UniProt	response to auxin	1

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005506	IEA	UniProt	iron ion binding	1
GO:0016705	IEA	InterPro	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	IEA	UniProt	heme binding	1
GO:0016711	IEA, IDA, TAS,	UniProt	flavonoid 3'-monooxygenase activity	1 2 AGRICOLA_IND:IND232292553
GO:0019825	ISS	Gene Ontology	oxygen binding	1

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005576	ISM	Gene Ontology	extracellular region	1
GO:0005789	IEA	UniProt	endoplasmic reticulum membrane	1
GO:0016020	IBA	UniProt	membrane	1
GO:0016021	IEA	UniProt	integral component of membrane	1

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001128	Cytochrome P450
IPR002401	Cytochrome P450, E-class, group I
IPR017972	Cytochrome P450, conserved site

Mapman id	Description
9.2.2.4.1	.Secondary metabolism.phenolics.flavonoid biosynthesis.dihydroflavonols.flavonoid 3'-hydroxylase

No SignalP domains detected for this gene.