Gene: AT5G06700 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G06700
Transcript Identifier
AT5G06700.1
Gene Type
Coding gene
Location
Chr5 : 2063638-2065810 : positive

Family

Gene family
HOM04M000041
(1489 genes in 27 species)
specific family
Subfamily
ORTHO04M000100
(511 genes in 27 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
trichome birefringence-like protein (DUF828)
Curated Summary
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication). A tbr mutant is impaired in its ability to deposit secondary wall cellulose in specific cell types, most notably in trichomes.
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Identifiers

Type Value
AliasTBR,TBR,TRICHOME BIREFRINGENCE
tidAT5G06700.1
UniProtQ9FG35

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009834 IMPGene Ontologyplant-type secondary cell wall biogenesis1
GO:0030244 IMPGene Ontologycellulose biosynthetic process1
GO:0009827 IMPGene Ontologyplant-type cell wall modification1
GO:0045489 IMPGene Ontologypectin biosynthetic process1
GO:0010223 IEAPLAZA Integrative Orthologysecondary shoot formationAT3G12060
GO:0006355 IEAPLAZA Integrative Orthologyregulation of transcription, DNA-templatedAT3G12060
GO:2000032 IEAPLAZA Integrative Orthologyregulation of secondary shoot formationAT3G12060

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0016413 IBAGene OntologyO-acetyltransferase activity1

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 ISMGene Ontologynucleus1
GO:0016021 IEAGene Ontologyintegral component of membrane1
GO:0005768 IDAGene Ontologyendosome1
GO:0005794 IDAGene OntologyGolgi apparatus1
GO:0005802 IDAGene Ontologytrans-Golgi network1

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR029962Trichome birefringence-like family
IPR029989Trichome birefringence/trichome birefringence-like 1
IPR026057PC-Esterase
IPR025846PMR5 N-terminal domain

Mapman id Description
35.1not assigned.annotated
No SignalP domains detected for this gene.