Gene: AT5G06140 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G06140
Transcript Identifier
AT5G06140.1
Gene Type
Coding gene
Location
Chr5 : 1856212-1858752 : negative

Family

Gene family
HOM04M004860
(39 genes in 28 species)
specific family

Descriptions

Description
sorting nexin 1
Curated Summary
Homolog of yeast retromer subunit VPS5. Part of a retromer-like protein complex involved in endosome to lysosome protein transport. In roots it co-localizes with the PIN2 auxin efflux carrier. Involved in endocytic sorting of membrane proteins including PIN2, BOR1 and BRI1.
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Identifiers

Type Value
AliasATSNX1,ARABIDOPSIS THALIANA SORTING NEXIN 1
symbolSNX1
tidAT5G06140.1
UniProtQ9FG38

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0007034 IEAInterProvacuolar transport
GO:0010252 IDA, IEA, UniProtauxin homeostasis1
GO:0048364 IMP, IEA, UniProtroot development1
GO:0006897 IBAUniProtendocytosis1
GO:0016050 IBAUniProtvesicle organization1
GO:0035556 ISSGene Ontologyintracellular signal transduction1
GO:0008333 TAS, ISS, UniProtendosome to lysosome transport1 2
GO:0009958 IMPUniProtpositive gravitropism1
GO:0006896 IDAUniProtGolgi to vacuole transport1
GO:0006623 IMPUniProtprotein targeting to vacuole1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0035091 IBA, IEA, UniProtphosphatidylinositol binding1
GO:0005515 IPIGene Ontologyprotein binding1

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0030904 IDA, ISS, IEA, UniProtretromer complex1 2
GO:0005794 IEAUniProtGolgi apparatus1
GO:0009507 ISMGene Ontologychloroplast1
GO:0019898 IBAUniProtextrinsic component of membrane1
GO:0031902 IEAUniProtlate endosome membrane1
GO:0005771 IDAUniProtmultivesicular body1
GO:0016020 IDAUniProtmembrane1
GO:0043231 IDAUniProtintracellular membrane-bounded organelle1
GO:0005768 IDAUniProtendosome1
GO:0005829 IDAUniProtcytosol1

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001683Phox homologous domain
IPR033241Sorting nexin 1, plant
IPR015404Sorting nexin Vps5-like, C-terminal
IPR027267Arfaptin homology (AH) domain/BAR domain

Mapman id Description
22.5.5.3.5.Vesicle trafficking.endomembrane trafficking.protein recycling.Retromer protein recycling complex.component SNX1
No SignalP domains detected for this gene.