PLAZA 4.0 Monocots gene overview : AT5G06070

Gene: AT5G06070 (Arabidopsis thaliana)

Overview

Gene Identifier: AT5G06070
Transcript Identifier: AT5G06070.1
Gene Type: Coding gene
Location: Chr5 : 1828426-1829106 : negative

Family

Gene family: HOM04M000501
(236 genes in 26 species)
specific family
Subfamily: ORTHO04M000726
(151 genes in 26 species)
specific family

Descriptions

Description: C2H2 and C2HC zinc fingers superfamily protein

Curated Summary: Isolated as a mutation defective in petal development with specific effects on adaxial petals which are filamentous or absent. Encodes a Superman (SUP) like protein with zinc finger motifs. Transcript is detected in petal primordia and protein is localized to the nucleus.

Identifiers

Type	Value
Alias	RAB
full_name	RABBIT EARS
symbol	RBE
tid	AT5G06070.1
UniProt	Q9LHS9

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006351	IEA	UniProt	transcription, DNA-templated	1
GO:0009934	NAS	Gene Ontology	regulation of meristem structural organization	1
GO:0030154	IEA	UniProt	cell differentiation	1
GO:0006355	TAS	UniProt	regulation of transcription, DNA-templated	1
GO:0048441	IMP	UniProt	petal development	1
GO:0009409	IEP	UniProt	response to cold	1
GO:0009908	IEA	PLAZA Tree-based Orthology	flower development	AT3G23130
GO:0010229	IEA	PLAZA Tree-based Orthology	inflorescence development	LOC_Os04g08600
GO:0045892	IEA	PLAZA Tree-based Orthology	negative regulation of transcription, DNA-templated	AT3G23130
GO:0051973	IEA	PLAZA Tree-based Orthology	positive regulation of telomerase activity	AT3G09290
GO:0009755	IEA	PLAZA Tree-based Orthology	hormone-mediated signaling pathway	AT3G23130
GO:0042127	IEA	PLAZA Tree-based Orthology	regulation of cell proliferation	AT3G23130
GO:0090691	IEA	PLAZA Tree-based Orthology	formation of plant organ boundary	AT3G23130
GO:0008361	IEA	PLAZA Tree-based Orthology	regulation of cell size	AT3G23130
GO:0010093	IEA	PLAZA Tree-based Orthology	specification of floral organ identity	AT3G23130

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003676	IEA, ISS,	UniProt	nucleic acid binding	1 2
GO:0008270	ISS	Gene Ontology	zinc ion binding	1
GO:0046872	IEA	UniProt	metal ion binding	1
GO:0003700	ISS	UniProt	transcription factor activity, sequence-specific DNA binding	1
GO:0003677	IEA	PLAZA Tree-based Orthology	DNA binding	AT3G23130
GO:0008135	IEA	PLAZA Tree-based Orthology	translation factor activity, RNA binding	LOC_Os04g08600

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IDA, ISM,	UniProt	nucleus	1 2
GO:0005739	IEA	PLAZA Tree-based Orthology	mitochondrion	LOC_Os04g08600
GO:0009536	IEA	PLAZA Tree-based Orthology	plastid	LOC_Os04g08600

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR013087	Zinc finger C2H2-type

Mapman id	Description
15.5.15	.RNA biosynthesis.transcriptional regulation.transcription factor (C2H2-ZF)

No SignalP domains detected for this gene.