Gene: AT5G05660 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G05660
Transcript Identifier
AT5G05660.1
Gene Type
Coding gene
Location
Chr5 : 1691113-1695473 : negative

Family

Gene family
HOM04M001901
(81 genes in 28 species)
specific family
Subfamily
ORTHO04M007370
(34 genes in 28 species)
specific family

Descriptions

Description
NF-X1-type zinc finger protein NFXL2
Curated Summary
Encodes a homolog of the mammalian zinc finger transcription factor NF-X1.
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Identifiers

Type Value
AliasATNFXL2,Arabidopsis NF-X like 2,EBI,EARLY BIRD
full_nameNFX1-like 2
symbolNFXL2
tidAT5G05660.1
UniProtQ9FFK8

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355 ISS, IEAGene Ontologyregulation of transcription, DNA-templated1
GO:0006366 IBAUniProttranscription from RNA polymerase II promoter1
GO:0016567 IEAUniProtprotein ubiquitination1
GO:0048511 IEAUniProtrhythmic process1
GO:0009651 IMPUniProtresponse to salt stress1
GO:0010310 IMPUniProtregulation of hydrogen peroxide metabolic process1
GO:0007623 IMPGene Ontologycircadian rhythm1
GO:0009908 IMPGene Ontologyflower development1
GO:0045893 IMPGene Ontologypositive regulation of transcription, DNA-templated1
GO:0042335 IMPGene Ontologycuticle development1
GO:0045892 IEPGene Ontologynegative regulation of transcription, DNA-templated1
GO:2000037 IMPGene Ontologyregulation of stomatal complex patterning1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003700 ISS, IEAGene Ontologytranscription factor activity, sequence-specific DNA binding1
GO:0008270 IEAUniProtzinc ion binding1
GO:0000977 IBAUniProtRNA polymerase II regulatory region sequence-specific DNA binding1
GO:0001078 IBAUniProttranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding1
GO:0016874 IEAUniProtligase activity1
GO:0000987 IDAGene Ontologycore promoter proximal region sequence-specific DNA binding1

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IEA, IDA, ISM, ISS, UniProtnucleus1 2 3 4
GO:0016021 IEAUniProtintegral component of membrane1

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR034078Transcription factor NFX1 family
IPR000967Zinc finger, NF-X1-type
IPR019786Zinc finger, PHD-type, conserved site
IPR001841Zinc finger, RING-type

Mapman id Description
15.5.53.6.RNA biosynthesis.transcriptional regulation.transcriptional repression.transcriptional repressor (NF-X1)
No SignalP domains detected for this gene.