PLAZA 4.0 Monocots gene overview : AT5G05280

Gene: AT5G05280 (Arabidopsis thaliana)

Overview

Gene Identifier: AT5G05280
Transcript Identifier: AT5G05280.1
Gene Type: Coding gene
Location: Chr5 : 1565509-1566039 : negative

Family

Gene family: HOM04M000012
(2892 genes in 29 species)
specific family
Duplication type: Block duplicate

Descriptions

Description: RING/U-box superfamily protein

Curated Summary: Encodes a RING-finger E3 ligase protein that controls anther dehiscence by positively regulating the expression of DAD1 in the jasmonic acid biosynthesis pathway.

Identifiers

Type	Value
Alias	DAF,DEFECTIVE IN ANTHER DEHISCENCE1- ( DAD1-) Activating Factor
tid	AT5G05280.1
UniProt	Q9FLC6

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0016567	IDA, IEA	Gene Ontology	protein ubiquitination	1 2
GO:0043161	IBA	Gene Ontology	proteasome-mediated ubiquitin-dependent protein catabolic process	1
GO:0009555	IMP	Gene Ontology	pollen development	1
GO:0009901	IMP	Gene Ontology	anther dehiscence	1
GO:0048443	IMP	Gene Ontology	stamen development	1
GO:0080141	IMP	Gene Ontology	regulation of jasmonic acid biosynthetic process	1

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0008270	IEA, ISS	Gene Ontology	zinc ion binding	1 2
GO:0061630	IBA	Gene Ontology	ubiquitin protein ligase activity	1
GO:0004842	IDA	Gene Ontology	ubiquitin-protein transferase activity	1

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0016021	IEA	Gene Ontology	integral component of membrane	1

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type

Mapman id	Description
19.2.2.1.5.3.3	.Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-class E3 ligase

No SignalP domains detected for this gene.