PLAZA 4.0 Monocots gene overview : AT5G05150

Gene: AT5G05150 (Arabidopsis thaliana)

Overview

Gene Identifier: AT5G05150
Transcript Identifier: AT5G05150.1
Gene Type: Coding gene
Location: Chr5 : 1524841-1526199 : negative

Family

Gene family: HOM04M000910
(150 genes in 29 species)
specific family
Subfamily: ORTHO04M001470
(95 genes in 29 species)
specific family
Duplication type: Block duplicate

Descriptions

Description: autophagy-related protein 18E

Identifiers

Type	Value
Alias	ATATG18E,ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18E,ATG18E,autophagy-related gene 18E
full_name	autophagy-related gene 18E
symbol	G18E
tid	AT5G05150.1
UniProt	Q9FHK8

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006914	IEA	Gene Ontology	autophagy	1
GO:0015031	IEA	Gene Ontology	protein transport	1

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IEA	InterPro	protein binding

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005774	IEA	Gene Ontology	vacuolar membrane	1
GO:0034045	IEA	Gene Ontology	pre-autophagosomal structure membrane	1

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR015943	WD40/YVTN repeat-like-containing domain
IPR001680	WD40 repeat
IPR017986	WD40-repeat-containing domain

Mapman id	Description
19.3.2.1.3	.Protein homeostasis.autophagy.ATG9-2-18 membrane shuttling complex.components.component ATG18

No SignalP domains detected for this gene.