Gene: AT5G03740 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G03740
Transcript Identifier
AT5G03740.1
Gene Type
Coding gene
Location
Chr5 : 981994-983961 : positive

Family

Gene family
HOM04M001820
(84 genes in 26 species)
specific family

Descriptions

Description
histone deacetylase 2C
Curated Summary
HD2-type histone deacetylase HDAC. Involved in the ABA and stress responses. Mediates transcriptional repression
Show more...

Identifiers

Type Value
AliasHDT3,HISTONE DEACETYLASE 3
symbolHD2C
tidAT5G03740.1
UniProtQ9LZR5

Toolbox

Explore

Create

View

Browse

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006351 IEAUniProttranscription, DNA-templated1
GO:0007275 IEAUniProtmulticellular organism development1
GO:0016569 IEAUniProtcovalent chromatin modification1
GO:0045892 IDAUniProtnegative regulation of transcription, DNA-templated1
GO:0009414 IMPUniProtresponse to water deprivation1
GO:0009651 IMPUniProtresponse to salt stress1
GO:0009737 IEPUniProtresponse to abscisic acid1
GO:0009944 IEAPLAZA Tree-based Orthologypolarity specification of adaxial/abaxial axisAT3G44750
GO:0030422 IEAPLAZA Tree-based Orthologyproduction of siRNA involved in RNA interferenceAT2G27840
GO:0010162 IEAPLAZA Tree-based Orthologyseed dormancy processAT3G44750
GO:0009294 IEAPLAZA Tree-based OrthologyDNA mediated transformationAT3G44750

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003676 ISS, IEAGene Ontologynucleic acid binding1
GO:0008270 ISSGene Ontologyzinc ion binding1
GO:0016787 IEAUniProthydrolase activity1
GO:0046872 IEAUniProtmetal ion binding1
GO:0004407 ISSGene Ontologyhistone deacetylase activity1
GO:0043565 IPIUniProtsequence-specific DNA binding1 2

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 ISMGene Ontologynucleus1
GO:0005730 IDAUniProtnucleolus1
GO:0005774 IEAPLAZA Tree-based Orthologyvacuolar membraneAT5G22650
GO:0005829 IEAPLAZA Tree-based OrthologycytosolAT5G22650
GO:0005739 IEAPLAZA Tree-based OrthologymitochondrionAT5G22650
GO:0005618 IEAPLAZA Tree-based Orthologycell wallAT5G22650

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR013087Zinc finger C2H2-type

Mapman id Description
12.3.2.2.Chromatin organisation.histone modifications.histone deacetylation.HD2 histone deacetylase
No SignalP domains detected for this gene.