Gene: AT5G02310 (Arabidopsis thaliana)

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Gene Identifier
AT5G02310
Transcript Identifier
AT5G02310.1
Gene Type
Coding gene
Location
Chr5 : 474279-482552 : positive

Family

Gene family
HOM04M002820
(58 genes in 29 species)
specific family

Descriptions

Description
proteolysis 6
Curated Summary
Encodes PROTEOLYSIS6 (PRT6), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Another component of the N-end rule pathway is arginyl-tRNA:protein arginyltransferase (ATE). Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination.
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Identifiers

Type Value
symbolPRT6
tidAT5G02310.1
UniProtF4KCC2

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0071596 IBAUniProtubiquitin-dependent protein catabolic process via the N-end rule pathway1
GO:0006511 IDAUniProtubiquitin-dependent protein catabolic process1
GO:0006723 IMPGene Ontologycuticle hydrocarbon biosynthetic process1
GO:0010025 IMPGene Ontologywax biosynthetic process1
GO:0009737 IMPUniProtresponse to abscisic acid1
GO:0010029 IMPUniProtregulation of seed germination1
GO:0050994 IMPUniProtregulation of lipid catabolic process1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0008270 IEAUniProtzinc ion binding
GO:0061630 IBAUniProtubiquitin protein ligase activity1
GO:0004842 IDAUniProtubiquitin-protein transferase activity1

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0000151 IBAUniProtubiquitin ligase complex1
GO:0005634 ISMGene Ontologynucleus1
GO:0005737 IBAUniProtcytoplasm1

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR003126Zinc finger, UBR-type
IPR001841Zinc finger, RING-type
IPR011991Winged helix-turn-helix DNA-binding domain

Mapman id Description
19.2.1.2.2.1.Protein homeostasis.ubiquitin-proteasome system.N-degron pathways.Arg/N-degron pathway.Arg/N-recognin activities.type-I-residues E3 ubiquitin ligase (PRT6)
No SignalP domains detected for this gene.