PLAZA 4.0 Monocots gene overview : AT4G34960

Gene: AT4G34960 (Arabidopsis thaliana)

Overview

Gene Identifier: AT4G34960
Transcript Identifier: AT4G34960.1
Gene Type: Coding gene
Location: Chr4 : 16648865-16650646 : positive

Family

Gene family: HOM04M000129
(689 genes in 29 species)
specific family
Subfamily: ORTHO04M000133
(426 genes in 29 species)
specific family
Duplication type: Tandem duplicate and Block duplicate

Descriptions

Description: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein

Identifiers

Type	Value
tid	AT4G34960.1
UniProt	O49605

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006457	IEA, ISS	Gene Ontology	protein folding	1 2
GO:0000413	IEA	Gene Ontology	protein peptidyl-prolyl isomerization	1

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003755	IEA, ISS	Gene Ontology	peptidyl-prolyl cis-trans isomerase activity	1 2

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005783	IEA	Gene Ontology	endoplasmic reticulum	1
GO:0005794	IDA	Gene Ontology	Golgi apparatus	1
GO:0005768	IDA	Gene Ontology	endosome	1
GO:0005802	IDA	Gene Ontology	trans-Golgi network	1

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR029000	Cyclophilin-like domain
IPR024936	Cyclophilin-type peptidyl-prolyl cis-trans isomerase
IPR002130	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain

Mapman id	Description
18.12.1	.Protein modification.protein folding.protein folding catalyst (Cyclophilin)

No SignalP domains detected for this gene.