Gene: AT4G30200 (Arabidopsis thaliana)

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Gene Identifier
AT4G30200
Transcript Identifier
AT4G30200.2
Gene Type
Coding gene
Location
Chr4 : 14786852-14790070 : negative

Family

Gene family
HOM04M001161
(123 genes in 25 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
vernalization5/VIN3-like protein
Curated Summary
Encodes a protein with similarity to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain. VEL1 is a part of a polycomb repressive complex (PRC2) that is involved in epigenetic silencing of the FLC flowering locus.
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Identifiers

Type Value
AliasVIL2,VIN3-Like 2
full_namevernalization5/VIN3-like 1
symbolVEL1
tidAT4G30200.2
UniProtQ9SUM4

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006351 IEAUniProttranscription, DNA-templated1
GO:0006355 IEAUniProtregulation of transcription, DNA-templated1
GO:0009908 IEAUniProtflower development1
GO:0009409 IEPUniProtresponse to cold1
GO:0010228 IPIGene Ontologyvegetative to reproductive phase transition of meristem1
GO:0032922 IEPUniProtcircadian regulation of gene expression1
GO:0048587 IMPUniProtregulation of short-day photoperiodism, flowering1
GO:1900111 IDAUniProtpositive regulation of histone H3-K9 dimethylation1
GO:0010048 IEAPLAZA Integrative Orthologyvernalization responseAT5G57380
GO:0070417 IEAPLAZA Integrative Orthologycellular response to coldAT5G57380
GO:0016571 IEAPLAZA Tree-based Orthologyhistone methylationAT3G24440
GO:0051571 IEAPLAZA Integrative Orthologypositive regulation of histone H3-K4 methylationAT5G57380
GO:0048575 IEAPLAZA Tree-based Orthologyshort-day photoperiodism, floweringAT3G24440
GO:0031062 IEAPLAZA Tree-based Orthologypositive regulation of histone methylationAT3G24440
GO:0061087 IEAPLAZA Integrative Orthologypositive regulation of histone H3-K27 methylationAT5G57380
GO:0009909 IEAPLAZA Tree-based Orthologyregulation of flower developmentAT3G24440
GO:0001666 IEAPLAZA Integrative Orthologyresponse to hypoxiaAT5G57380
GO:0045814 IEAPLAZA Integrative Orthologynegative regulation of gene expression, epigeneticAT5G57380
GO:0048572 IEAPLAZA Tree-based Orthologyshort-day photoperiodismAT3G24440

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515 IPI, IEAGene Ontologyprotein binding1
GO:0003677 IEAUniProtDNA binding1
GO:0046872 IEAUniProtmetal ion binding1
GO:0042802 IDAUniProtidentical protein binding1
GO:0035064 IDAUniProtmethylated histone binding1

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 ISMGene Ontologynucleus1
GO:0005677 IDAUniProtchromatin silencing complex1
GO:0031519 IDAUniProtPcG protein complex1
GO:0009506 IDAUniProtplasmodesma1
GO:0016607 IEAPLAZA Integrative Orthologynuclear speckAT5G57380

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR003961Fibronectin type III
IPR013783Immunoglobulin-like fold
IPR032881Oberon, PHD finger domain

Mapman id Description
12.3.3.1.2.2.Chromatin organisation.histone modifications.histone lysine methylation.PRC2 histone methylation complex.associated protein factors.PRC2-VRN-interacting PHD protein (VIN3|VRN5)
No SignalP domains detected for this gene.