Gene: AT4G28370 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT4G28370
Transcript Identifier
AT4G28370.1
Gene Type
Coding gene
Location
Chr4 : 14035016-14039122 : positive

Family

Gene family
HOM04M004618
(40 genes in 28 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
RING/U-box superfamily protein
Curated Summary
Encodes an E3 ubiquitin ligase that is involved in plant cell wall modification, seed mucilage extrusion, and controls the degree of pectin methylesterification in seed mucilage. It is located in the endomembrane system, likely localized in late endosome/multivesicular bodies/prevacular compartment. It has been shown to ubiquitinate proteins in conjunction with UBA1 and UBC8.
Show more...

Identifiers

Type Value
AliasFLY1,FLYING SAUCER 1
tidAT4G28370.1
UniProtQ5PP23

Toolbox

Explore

Create

View

Browse

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0000209 IBAGene Ontologyprotein polyubiquitination1
GO:0042787 IBAGene Ontologyprotein ubiquitination involved in ubiquitin-dependent protein catabolic process1
GO:0043161 IBAGene Ontologyproteasome-mediated ubiquitin-dependent protein catabolic process1
GO:0009827 IMPGene Ontologyplant-type cell wall modification1
GO:0048363 IMPGene Ontologymucilage pectin metabolic process1
GO:0080001 IMPGene Ontologymucilage extrusion from seed coat1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0008270 IEA, ISSGene Ontologyzinc ion binding1 2
GO:0061630 IBAGene Ontologyubiquitin protein ligase activity1
GO:0004842 IDAGene Ontologyubiquitin-protein transferase activity1

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0016021 IEAGene Ontologyintegral component of membrane1
GO:0012505 IDAGene Ontologyendomembrane system1

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR001841Zinc finger, RING-type
IPR013083Zinc finger, RING/FYVE/PHD-type

Mapman id Description
35.1not assigned.annotated
No SignalP domains detected for this gene.