PLAZA 4.0 Monocots gene overview : AT4G26930

Gene: AT4G26930 (Arabidopsis thaliana)

Overview

Gene Identifier: AT4G26930
Transcript Identifier: AT4G26930.1
Gene Type: Coding gene
Location: Chr4 : 13527770-13529172 : positive

Family

Gene family: HOM04M000010
(3187 genes in 28 species)
specific family
Duplication type: Block duplicate

Descriptions

Description: myb domain protein 97

Curated Summary: Encodes a putative transcription factor (MYB97).

Identifiers

Type	Value
Alias	AtMYB97,myb domain protein 97
symbol	MYB97
tid	AT4G26930.1
UniProt	Q9S773

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006351	IEA	UniProt	transcription, DNA-templated	1
GO:0006357	IBA	UniProt	regulation of transcription from RNA polymerase II promoter	1
GO:0030154	IBA	Gene Ontology	cell differentiation	1
GO:0006355	TAS	UniProt	regulation of transcription, DNA-templated	1
GO:0010468	IMP	UniProt	regulation of gene expression	1 2
GO:0048235	IMP	UniProt	pollen sperm cell differentiation	1 2
GO:0080092	IMP	UniProt	regulation of pollen tube growth	1 2
GO:0045893	IDA	UniProt	positive regulation of transcription, DNA-templated	1 2
GO:0009860	IEA	PLAZA Integrative Orthology	pollen tube growth	AT5G55020

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	ISS, IEA	Gene Ontology	DNA binding	1
GO:0000981	IBA	UniProt	RNA polymerase II transcription factor activity, sequence-specific DNA binding	1
GO:0001135	IBA	UniProt	transcription factor activity, RNA polymerase II transcription factor recruiting	1
GO:0003700	IDA, ISS,	UniProt	transcription factor activity, sequence-specific DNA binding	1 2 3
GO:0043565	IBA	UniProt	sequence-specific DNA binding	1
GO:0044212	IBA	UniProt	transcription regulatory region DNA binding	1

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IDA, ISM,	UniProt	nucleus	1 2 3
GO:0090406	IDA	UniProt	pollen tube	1 2

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox domain-like

Mapman id	Description
15.5.2.1	.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)

No SignalP domains detected for this gene.