Gene: AT4G26000 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT4G26000
Transcript Identifier
AT4G26000.1
Gene Type
Coding gene
Location
Chr4 : 13197280-13199539 : positive

Family

Gene family
HOM04M001085
(129 genes in 27 species)
specific family
Subfamily
ORTHO04M007235
(34 genes in 23 species)
specific family

Descriptions

Description
RNA-binding KH domain-containing protein
Curated Summary
Encodes a novel Arabidopsis gene encoding a polypeptide with K-homology (KH) RNA-binding modules, which acts on vegetative growth and pistil development. Genetic studies suggest that PEP interacts with element(s) of the CLAVATA signaling pathway.
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Identifiers

Type Value
full_namePEPPER
symbolPEP
tidAT4G26000.1
UniProtQ9SZH4

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355 IEAUniProtregulation of transcription, DNA-templated1
GO:0048367 IMPUniProtshoot system development1
GO:0048467 IMPUniProtgynoecium development1
GO:0006396 IMPUniProtRNA processing1 2
GO:0009299 IMPUniProtmRNA transcription1 2
GO:0048577 IMPUniProtnegative regulation of short-day photoperiodism, flowering1 2
GO:0048579 IMPUniProtnegative regulation of long-day photoperiodism, flowering1 2
GO:0030497 IBAUniProtfatty acid elongation
GO:0007275 IEAUniProtmulticellular organism development
GO:0030148 IBAUniProtsphingolipid biosynthetic process
GO:0030154 IMPUniProtcell differentiation
GO:0048640 IMPUniProtnegative regulation of developmental growth
GO:0050732 IMPUniProtnegative regulation of peptidyl-tyrosine phosphorylation
GO:0051302 IMPUniProtregulation of cell division
GO:0042761 IMPUniProtvery long-chain fatty acid biosynthetic process
GO:0009911 IEAPLAZA Tree-based Orthologypositive regulation of flower developmentAT3G04610

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003723 IEAUniProtRNA binding1
GO:0003676 ISS, IEAGene Ontologynucleic acid binding1
GO:0005515 IPIGene Ontologyprotein binding1 2
GO:0102343 IEAUniProt3-hydroxy-arachidoyl-CoA dehydratase activity
GO:0102344 IEAUniProt3-hydroxy-behenoyl-CoA dehydratase activity
GO:0102345 IEAUniProt3-hydroxy-lignoceroyl-CoA dehydratase activity
GO:0018812 IBAUniProt3-hydroxyacyl-CoA dehydratase activity
GO:0004725 ISSUniProtprotein tyrosine phosphatase activity

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IDA, IEAISM, UniProtnucleus1 2 3
GO:0030176 IBAUniProtintegral component of endoplasmic reticulum membrane
GO:0005829 IDAUniProtcytosol
GO:0005783 IDAUniProtendoplasmic reticulum
GO:0005789 IEAUniProtendoplasmic reticulum membrane
GO:0016021 IDAUniProtintegral component of membrane
GO:0005737 IEAPLAZA Tree-based OrthologycytoplasmAT3G04610

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR004088K Homology domain, type 1
IPR004087K Homology domain

Mapman id Description
35.1not assigned.annotated
No SignalP domains detected for this gene.