Gene: AT4G25530 (Arabidopsis thaliana)

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Gene Identifier
AT4G25530
Transcript Identifier
AT4G25530.1
Gene Type
Coding gene
Location
Chr4 : 13039312-13042242 : positive

Family

Gene family
HOM04M000194
(476 genes in 27 species)
specific family
Subfamily
ORTHO04M000128
(433 genes in 27 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
FLOWERING WAGENINGEN
Curated Summary
Encodes a homeodomain-containing transcription factor that controls flowering. FWA is silenced in wild type plants and reverse of the imprinted silencing causes a late flowering phenotype. FWA gene contains two tandem repeats around the transcription start site that are necessary and sufficient for silencing via DNA methylation.
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Identifiers

Type Value
AliasHDG6,HOMEODOMAIN GLABROUS 6
symbolFWA
tidAT4G25530.1
UniProtQ9FVI6

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006351 IEAUniProttranscription, DNA-templated1
GO:0006355 IEA, ISSGene Ontologyregulation of transcription, DNA-templated1 2
GO:0007275 IEAUniProtmulticellular organism development1
GO:0006349 IEPUniProtregulation of gene expression by genetic imprinting1
GO:0031047 IMPUniProtgene silencing by RNA1
GO:0009909 IEPGene Ontologyregulation of flower development1
GO:0009911 IMPUniProtpositive regulation of flower development1
GO:0090627 IEAPLAZA Tree-based Orthologyplant epidermal cell differentiationAT4G21750
GO:0048497 IEAPLAZA Tree-based Orthologymaintenance of floral organ identityAT1G05230
GO:0043481 IEAPLAZA Tree-based Orthologyanthocyanin accumulation in tissues in response to UV lightAT4G00730
GO:0009957 IEAPLAZA Tree-based Orthologyepidermal cell fate specificationAT1G79840
GO:0009913 IEAPLAZA Tree-based Orthologyepidermal cell differentiationAT4G21750
GO:0009827 IEAPLAZA Tree-based Orthologyplant-type cell wall modificationAT4G00730
GO:0048364 IEAPLAZA Tree-based Orthologyroot developmentAT4G00730
GO:0009828 IEAPLAZA Tree-based Orthologyplant-type cell wall looseningAT1G73360
GO:0048825 IEAPLAZA Tree-based Orthologycotyledon developmentAT4G21750
GO:0042335 IEAPLAZA Tree-based Orthologycuticle developmentAT4G00730
GO:0009845 IEAPLAZA Tree-based Orthologyseed germinationAT4G21750
GO:0048765 IEAPLAZA Tree-based Orthologyroot hair cell differentiationAT4G00730
GO:0010090 IEAPLAZA Tree-based Orthologytrichome morphogenesisAT1G05230
GO:0010091 IEAPLAZA Tree-based Orthologytrichome branchingAT1G73360
GO:0010062 IEAPLAZA Tree-based Orthologynegative regulation of trichoblast fate specificationAT1G79840

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677 IEA, ISS, UniProtDNA binding1 2
GO:0008289 IEAUniProtlipid binding1
GO:0003700 ISSUniProttranscription factor activity, sequence-specific DNA binding1
GO:0005515 IPIGene Ontologyprotein binding1
GO:0042803 IPIUniProtprotein homodimerization activity1
GO:0043565 IEAPLAZA Tree-based Orthologysequence-specific DNA bindingAT5G17320
GO:0000976 IEAPLAZA Tree-based Orthologytranscription regulatory region sequence-specific DNA bindingAT1G73360

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IDA, IEAISM, ISS, UniProtnucleus1 2 3

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR023393START-like domain
IPR001356Homeobox domain
IPR002913START domain
IPR009057Homeobox domain-like

Mapman id Description
15.5.3.3.RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (HD-ZIP IV)
No SignalP domains detected for this gene.