Gene: AT4G25500 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT4G25500
Transcript Identifier
AT4G25500.1
Gene Type
Coding gene
Location
Chr4 : 13025168-13027243 : positive

Family

Gene family
HOM04M001025
(135 genes in 29 species)
specific family
Subfamily
ORTHO04M001689
(88 genes in 28 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
arginine/serine-rich splicing factor 35
Curated Summary
encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.
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Identifiers

Type Value
AliasAT-SRP40,ATRSP35,ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35,ATRSP40,At-RS40,arginine/serine-rich splicing factor 40,RSP35,arginine/serine-rich splicing factor 35
full_namearginine/serine-rich splicing factor 40
symbolRS40
tidAT4G25500.1
UniProtP92965

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0008380 NASUniProtRNA splicing1
GO:0031053 IGIUniProtprimary miRNA processing1 2
GO:0000398 ISSUniProtmRNA splicing, via spliceosome1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003676 IEAInterPronucleic acid binding
GO:0003723 IEA, ISS, UniProtRNA binding1 2
GO:0005515 IPIGene Ontologyprotein binding1 2
GO:0003729 IEAPLAZA Integrative OrthologymRNA bindingAT5G52040

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 ISMGene Ontologynucleus1
GO:0016607 IDAUniProtnuclear speck1
GO:0010445 IDAUniProtnuclear dicing body1 2
GO:0005681 ISSUniProtspliceosomal complex1

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000504RNA recognition motif domain

Mapman id Description
16.4.6.3.RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.splicing factor (RS31|40|41)
No SignalP domains detected for this gene.