PLAZA 4.0 Monocots gene overview : AT4G20380

Gene: AT4G20380 (Arabidopsis thaliana)

Overview

Gene Identifier: AT4G20380
Transcript Identifier: AT4G20380.1
Gene Type: Coding gene
Location: Chr4 : 11005027-11006438 : positive

Family

Gene family: HOM04M001913
(80 genes in 28 species)
specific family

Descriptions

Description: LSD1 zinc finger family protein

Curated Summary: LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challenge

Identifiers

Type	Value
full_name	LESION SIMULATING DISEASE
symbol	LSD1
tid	AT4G20380.1
UniProt	P94077-2

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009626	IEA, IMP,	UniProt	plant-type hypersensitive response	1 2
GO:0009862	IEP	UniProt	systemic acquired resistance, salicylic acid mediated signaling pathway	1
GO:0002240	IMP	UniProt	response to molecule of oomycetes origin	1
GO:0001666	IMP	UniProt	response to hypoxia	1
GO:0010310	IMP	UniProt	regulation of hydrogen peroxide metabolic process	1
GO:0010602	IMP	UniProt	regulation of 1-aminocyclopropane-1-carboxylate metabolic process	1
GO:0010618	IMP	UniProt	aerenchyma formation	1
GO:0010104	IMP	UniProt	regulation of ethylene-activated signaling pathway	1
GO:0043067	IGI	Gene Ontology	regulation of programmed cell death	1
GO:0043069	IGI	UniProt	negative regulation of programmed cell death	1
GO:0000303	IMP	UniProt	response to superoxide	1
GO:0008219	IMP	UniProt	cell death	1
GO:0031348	IEA	PLAZA Tree-based Orthology	negative regulation of defense response	LOC_Os08g06280
GO:2000121	IEA	PLAZA Tree-based Orthology	regulation of removal of superoxide radicals	AT1G32540
GO:0043068	IEA	PLAZA Tree-based Orthology	positive regulation of programmed cell death	AT1G32540
GO:0045595	IEA	PLAZA Tree-based Orthology	regulation of cell differentiation	LOC_Os08g06280
GO:0009814	IEA	PLAZA Tree-based Orthology	defense response, incompatible interaction	AT1G32540
GO:0034051	IEA	PLAZA Tree-based Orthology	negative regulation of plant-type hypersensitive response	LOC_Os08g06280
GO:0034052	IEA	PLAZA Tree-based Orthology	positive regulation of plant-type hypersensitive response	AT1G32540

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003700	TAS	UniProt	transcription factor activity, sequence-specific DNA binding	1
GO:0005515	IPI	Gene Ontology	protein binding	1

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005576	ISM	Gene Ontology	extracellular region	1
GO:0005634	IEA	UniProt	nucleus	1
GO:0005737	IEA	UniProt	cytoplasm	1

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR005735	Zinc finger, LSD1-type

Mapman id	Description
27.2.1	.Multi-process regulation.Programmed Cell Death (PCD) system.PCD regulatory protein (LSD/LOL)

No SignalP domains detected for this gene.