Gene: AT4G20380 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT4G20380
Transcript Identifier
AT4G20380.1
Gene Type
Coding gene
Location
Chr4 : 11005027-11006438 : positive

Family

Gene family
HOM04M001913
(80 genes in 28 species)
specific family

Descriptions

Description
LSD1 zinc finger family protein
Curated Summary
LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challenge
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Identifiers

Type Value
full_nameLESION SIMULATING DISEASE
symbolLSD1
tidAT4G20380.1
UniProtP94077-2

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009626 IEA, IMP, UniProtplant-type hypersensitive response1 2
GO:0009862 IEPUniProtsystemic acquired resistance, salicylic acid mediated signaling pathway1
GO:0002240 IMPUniProtresponse to molecule of oomycetes origin1
GO:0001666 IMPUniProtresponse to hypoxia1
GO:0010310 IMPUniProtregulation of hydrogen peroxide metabolic process1
GO:0010602 IMPUniProtregulation of 1-aminocyclopropane-1-carboxylate metabolic process1
GO:0010618 IMPUniProtaerenchyma formation1
GO:0010104 IMPUniProtregulation of ethylene-activated signaling pathway1
GO:0043067 IGIGene Ontologyregulation of programmed cell death1
GO:0043069 IGIUniProtnegative regulation of programmed cell death1
GO:0000303 IMPUniProtresponse to superoxide1
GO:0008219 IMPUniProtcell death1
GO:0031348 IEAPLAZA Tree-based Orthologynegative regulation of defense responseLOC_Os08g06280
GO:2000121 IEAPLAZA Tree-based Orthologyregulation of removal of superoxide radicalsAT1G32540
GO:0043068 IEAPLAZA Tree-based Orthologypositive regulation of programmed cell deathAT1G32540
GO:0045595 IEAPLAZA Tree-based Orthologyregulation of cell differentiationLOC_Os08g06280
GO:0009814 IEAPLAZA Tree-based Orthologydefense response, incompatible interactionAT1G32540
GO:0034051 IEAPLAZA Tree-based Orthologynegative regulation of plant-type hypersensitive responseLOC_Os08g06280
GO:0034052 IEAPLAZA Tree-based Orthologypositive regulation of plant-type hypersensitive responseAT1G32540

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003700 TASUniProttranscription factor activity, sequence-specific DNA binding1
GO:0005515 IPIGene Ontologyprotein binding1

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005576 ISMGene Ontologyextracellular region1
GO:0005634 IEAUniProtnucleus1
GO:0005737 IEAUniProtcytoplasm1

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR005735Zinc finger, LSD1-type

Mapman id Description
27.2.1.Multi-process regulation.Programmed Cell Death (PCD) system.PCD regulatory protein (LSD/LOL)
No SignalP domains detected for this gene.