PLAZA 4.0 Monocots gene overview : AT4G20115

Gene: AT4G20115 (Arabidopsis thaliana)

Overview

Gene Identifier: AT4G20115
Transcript Identifier: AT4G20115.1
Gene Type: RNA gene
Location: Chr4 : 10878724-10878797 : negative

Family

No gene family defined for this gene.

Descriptions

Description: tRNA-Thr

Identifiers

Type	Value
rna_type	tRNA
tid	AT4G20115.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006412	TAS	Gene Ontology	translation	1
GO:0006414	TAS	Gene Ontology	translational elongation	1

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0030533	TAS	Gene Ontology	triplet codon-amino acid adaptor activity	1

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005575	ND	Gene Ontology	cellular_component	1

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

No InterPro domains detected for this gene.

No MapMan annotations defined for this gene.

No SignalP domains detected for this gene.