PLAZA 4.0 Monocots gene overview : AT4G15570

Gene: AT4G15570 (Arabidopsis thaliana)

Overview

Gene Identifier: AT4G15570
Transcript Identifier: AT4G15570.1
Gene Type: Coding gene
Location: Chr4 : 8893043-8898858 : positive

Family

Gene family: HOM04M000150
(583 genes in 29 species)
specific family
Subfamily: ORTHO04M004167
(48 genes in 29 species)
specific family

Descriptions

Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein

Curated Summary: Similar to yeast Sen1 (splicing endonuclease 1)helicase protein. Involved in female gametophyte development.

Identifiers

Type	Value
full_name	MAGATAMA 3
symbol	MAA3
tid	AT4G15570.1
UniProt	B6SFA4

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009553	IMP	UniProt	embryo sac development	1
GO:0009875	IMP	UniProt	pollen-pistil interaction	1
GO:0010183	IMP	UniProt	pollen tube guidance	1

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004386	IEA	UniProt	helicase activity	1
GO:0005524	IEA	UniProt	ATP binding	1
GO:0016787	IEA	UniProt	hydrolase activity

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IEA, ISM,	UniProt	nucleus	1 2

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR014001	Helicase superfamily 1/2, ATP-binding domain
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Mapman id	Description
35.1	not assigned.annotated

No SignalP domains detected for this gene.