PLAZA 4.0 Monocots gene overview : AT4G13770

Gene: AT4G13770 (Arabidopsis thaliana)

Overview

Gene Identifier: AT4G13770
Transcript Identifier: AT4G13770.1
Gene Type: Coding gene
Location: Chr4 : 7990682-7992282 : negative

Family

Gene family: HOM04M000004
(4272 genes in 29 species)
specific family
Subfamily: ORTHO04M000343
(252 genes in 23 species)
specific family

Descriptions

Description: cytochrome P450, family 83, subfamily A, polypeptide 1

Curated Summary: Encodes a cytochrome p450 enzyme that catalyzes the initial conversion of aldoximes to thiohydroximates in the synthesis of glucosinolates not derived from tryptophan. Also has a role in auxin homeostasis.

Identifiers

Type	Value
Alias	REF2,REDUCED EPIDERMAL FLUORESCENCE 2
full_name	cytochrome P450, family 83, subfamily A, polypeptide 1
symbol	CYP83A1
tid	AT4G13770.1
UniProt	P48421

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0055114	IEA	Gene Ontology	oxidation-reduction process	1
GO:0009411	NAS	Gene Ontology	response to UV	1
GO:0019761	IDA	UniProt	glucosinolate biosynthetic process	1
GO:0009625	IEP	UniProt	response to insect	1
GO:0010114	IEA	PLAZA Integrative Orthology	response to red light	AT4G31500
GO:0042742	IEA	PLAZA Integrative Orthology	defense response to bacterium	AT4G31500
GO:0009641	IEA	PLAZA Integrative Orthology	shade avoidance	AT4G31500
GO:0009682	IEA	PLAZA Integrative Orthology	induced systemic resistance	AT4G31500
GO:0048830	IEA	PLAZA Integrative Orthology	adventitious root development	AT4G31500
GO:0000162	IEA	PLAZA Integrative Orthology	tryptophan biosynthetic process	AT4G31500
GO:0009684	IEA	PLAZA Integrative Orthology	indoleacetic acid biosynthetic process	AT4G31500
GO:0009759	IEA	PLAZA Integrative Orthology	indole glucosinolate biosynthetic process	AT4G31500
GO:0052544	IEA	PLAZA Integrative Orthology	defense response by callose deposition in cell wall	AT4G31500

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005506	IEA	UniProt	iron ion binding	1
GO:0016705	IEA	InterPro	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	IEA	UniProt	heme binding	1
GO:0019825	ISS	Gene Ontology	oxygen binding	1
GO:0016709	IDA	UniProt	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005789	IEA	UniProt	endoplasmic reticulum membrane	1
GO:0016020	IBA	UniProt	membrane	1
GO:0016021	IEA	UniProt	integral component of membrane	1
GO:0005886	IEA	PLAZA Integrative Orthology	plasma membrane	AT4G31500
GO:0005783	IEA	PLAZA Integrative Orthology	endoplasmic reticulum	AT4G31500
GO:0005739	IEA	PLAZA Integrative Orthology	mitochondrion	AT4G31500

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001128	Cytochrome P450
IPR002401	Cytochrome P450, E-class, group I
IPR017972	Cytochrome P450, conserved site

Mapman id	Description
9.5.1.5.2	.Secondary metabolism.glucosinolates.glucosinolate biosynthesis.aliphatic core structure.aldoxime oxidase

No SignalP domains detected for this gene.