PLAZA 4.0 Monocots gene overview : AT4G11040

Gene: AT4G11040 (Arabidopsis thaliana)

Overview

Gene Identifier: AT4G11040
Transcript Identifier: AT4G11040.2
Gene Type: Coding gene
Location: Chr4 : 6745161-6746230 : positive

Family

Gene family: HOM04M000055
(1354 genes in 29 species)
specific family

Descriptions

Description: Protein phosphatase 2C family protein

Curated Summary: Encodes a nuclear localized protein with sequence similarity to PP2C phosphatases that is involved in seed dormancy. Loss of function mutations have reduced seed dormancy but does not act through ABA or DOG1 pathways.

Identifiers

Type	Value
Alias	RDO5,REDUCED DORMANCY 5
tid	AT4G11040.2
UniProt	F4JN82

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006470	IEA	Gene Ontology	protein dephosphorylation	1
GO:1902040	IMP	Gene Ontology	positive regulation of seed dormancy process	1 2
GO:0010162	IMP	Gene Ontology	seed dormancy process	1 2

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003824	IEA	InterPro	catalytic activity
GO:0004722	IEA, ISS, TAS	Gene Ontology	protein serine/threonine phosphatase activity	1 2 3 4
GO:0046872	IEA	Gene Ontology	metal ion binding	1
GO:0004721	IDA	Gene Ontology	phosphoprotein phosphatase activity	1 2
GO:0001691	IDA	Gene Ontology	pseudophosphatase activity	1 2
GO:0043169	IEA	PLAZA Homology (enrichment)	cation binding

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005886	ISM	Gene Ontology	plasma membrane	1
GO:0005634	IDA	Gene Ontology	nucleus	1 2

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001932	PPM-type phosphatase domain
IPR015655	Protein phosphatase 2C family

Mapman id	Description
35.1	not assigned.annotated

No SignalP domains detected for this gene.