PLAZA 4.0 Monocots gene overview : AT4G09460

Gene: AT4G09460 (Arabidopsis thaliana)

Overview

Gene Identifier: AT4G09460
Transcript Identifier: AT4G09460.1
Gene Type: Coding gene
Location: Chr4 : 5993019-5994038 : positive

Family

Gene family: HOM04M000010
(3187 genes in 28 species)
specific family
Duplication type: Block duplicate

Descriptions

Description: myb domain protein 6

Curated Summary: Encodes myb6 DNA-binding protein.

Identifiers

Type	Value
Alias	AtMYB6,myb domain protein 6
symbol	MYB6
tid	AT4G09460.1
UniProt	Q38851

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006351	IEA	UniProt	transcription, DNA-templated	1
GO:0006357	IBA	UniProt	regulation of transcription from RNA polymerase II promoter	1
GO:0030154	IBA	UniProt	cell differentiation	1
GO:0009739	IEP	UniProt	response to gibberellin	1
GO:0009751	IEP	UniProt	response to salicylic acid	1
GO:0009753	IEP	UniProt	response to jasmonic acid	1
GO:0006355	ISS	Gene Ontology	regulation of transcription, DNA-templated	1
GO:0009737	IEA	PLAZA Integrative Orthology	response to abscisic acid	AT1G22640
GO:0009651	IEA	PLAZA Integrative Orthology	response to salt stress	AT1G22640
GO:0080086	IEA	PLAZA Integrative Orthology	stamen filament development	AT1G22640
GO:0009892	IEA	PLAZA Integrative Orthology	negative regulation of metabolic process	AT1G22640
GO:0048443	IEA	PLAZA Integrative Orthology	stamen development	AT1G22640
GO:0009611	IEA	PLAZA Integrative Orthology	response to wounding	AT1G22640
GO:0009740	IEA	PLAZA Integrative Orthology	gibberellic acid mediated signaling pathway	AT1G22640
GO:0009867	IEA	PLAZA Integrative Orthology	jasmonic acid mediated signaling pathway	AT1G22640
GO:0009800	IEA	PLAZA Integrative Orthology	cinnamic acid biosynthetic process	AT1G22640

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	ISS, TAS, IEA	Gene Ontology	DNA binding	1 2
GO:0000981	IBA	UniProt	RNA polymerase II transcription factor activity, sequence-specific DNA binding	1
GO:0001135	IBA	UniProt	transcription factor activity, RNA polymerase II transcription factor recruiting	1
GO:0043565	IBA	UniProt	sequence-specific DNA binding	1
GO:0044212	IBA	UniProt	transcription regulatory region DNA binding	1
GO:0003700	ISS	UniProt	transcription factor activity, sequence-specific DNA binding	1

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IBA, ISM,	UniProt	nucleus	1 2

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox domain-like

Mapman id	Description
15.5.2.1	.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)

No SignalP domains detected for this gene.