PLAZA 4.0 Monocots gene overview : AT4G05000

Gene: AT4G05000 (Arabidopsis thaliana)

Overview

Gene Identifier: AT4G05000
Transcript Identifier: AT4G05000.2
Gene Type: Coding gene
Location: Chr4 : 2563953-2564585 : positive

Family

Gene family: HOM04M005107
(38 genes in 27 species)
specific family
Duplication type: Block duplicate

Descriptions

Description: Vacuolar protein sorting-associated protein VPS28 family protein

Identifiers

Type	Value
symbol	VPS28-2
tid	AT4G05000.2
UniProt	Q9S9T7

Toolbox

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006810	ISS	Gene Ontology	transport	1
GO:0043328	IBA	UniProt	protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	1

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005215	ISS	Gene Ontology	transporter activity	1
GO:0032403	IBA	UniProt	protein complex binding	1
GO:0005515	IPI	Gene Ontology	protein binding	1

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0000813	ISS, IBA,	UniProt	ESCRT I complex	1 2
GO:0005634	ISM	Gene Ontology	nucleus	1
GO:0005802	IEA	PLAZA Integrative Orthology	trans-Golgi network	AT4G21560
GO:0005794	IEA	PLAZA Integrative Orthology	Golgi apparatus	AT4G21560

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR007143	Vacuolar protein sorting-associated, VPS28
IPR017898	Vacuolar protein sorting-associated, VPS28, N-terminal
IPR017899	Vacuolar protein sorting-associated, VPS28, C-terminal

Mapman id	Description
22.5.4.1.2	.Vesicle trafficking.endomembrane trafficking.ESCRT (Endosomal Sorting Complex Required for Transport) complexes.ESCRT-I complex.component VPS28

No SignalP domains detected for this gene.