Gene: AT4G04920 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT4G04920
Transcript Identifier
AT4G04920.3
Gene Type
Coding gene
Location
Chr4 : 2497931-2504996 : positive

Family

Gene family
HOM04M003952
(44 genes in 26 species)
specific family
Subfamily
ORTHO04M005043
(42 genes in 26 species)
specific family

Descriptions

Description
sensitive to freezing 6
Curated Summary
Encodes a nuclear targeted protein that plays a role in the CBF pathway -downstream of CBF translation. Mutants have impaired cold responses, reduced levels of cold induced RNA transcripts, are sensitive to osmotic stress. Required for expression of CBF-controlled cold-upregulated genes and some, but not all, other cold up-regulated genes. Required for recruitment of the Mediator complex and RNA polymerase II to CBF-controlled cold-responsive genes. Required for expression of some dark-upregulated genes.
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Identifiers

Type Value
AliasAtSFR6,IEN1,INSENSITIVE TO EXOGENOUS NAD 1,MED16,MEDIATOR 16,YID1,YELLOW AND SENSITIVE TO IRON-DEFICIENCY 1
full_nameSENSITIVE TO FREEZING 6
symbolSFR6
tidAT4G04920.3

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009631 IMPGene Ontologycold acclimation1
GO:0006970 IMPUniProtresponse to osmotic stress1
GO:0032922 IMPUniProtcircadian regulation of gene expression1
GO:0048586 IMPUniProtregulation of long-day photoperiodism, flowering1
GO:0006355 IMPUniProtregulation of transcription, DNA-templated1
GO:0010104 IMPUniProtregulation of ethylene-activated signaling pathway1
GO:1901672 IMPUniProtpositive regulation of systemic acquired resistance1
GO:2000022 IMPUniProtregulation of jasmonic acid mediated signaling pathway1
GO:0048364 IGIUniProtroot development1 2
GO:1902066 IGIUniProtregulation of cell wall pectin metabolic process1 2
GO:2001009 IGIUniProtregulation of plant-type cell wall cellulose biosynthetic process1 2
GO:0006351 IEAUniProttranscription, DNA-templated

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003674 NDGene Ontologymolecular_function1

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IDA, ISM, UniProtnucleus1 2
GO:0016592 IDAUniProtmediator complex

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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No InterPro domains detected for this gene.
Mapman id Description
15.3.3.3.6.RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.tail module.component MED16
No SignalP domains detected for this gene.