PLAZA 4.0 Monocots gene overview : AT4G04890

Gene: AT4G04890 (Arabidopsis thaliana)

Overview

Gene Identifier: AT4G04890
Transcript Identifier: AT4G04890.1
Gene Type: Coding gene
Location: Chr4 : 2476970-2480090 : negative

Family

Gene family: HOM04M000194
(476 genes in 27 species)
specific family
Subfamily: ORTHO04M000128
(433 genes in 27 species)
specific family
Duplication type: Block duplicate

Descriptions

Description: protodermal factor 2

Curated Summary: Encodes a homeodomain protein that is expressed in the LI layer of the vegetative, floral and inflorescence meristems. Binds to the L1 box promoter element which is required in some proteins for L1 specific expression.

Identifiers

Type	Value
symbol	PDF2
tid	AT4G04890.1
UniProt	Q93V99

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006355	IEA, ISS	Gene Ontology	regulation of transcription, DNA-templated	1 2
GO:0006351	IEA	UniProt	transcription, DNA-templated	1
GO:0009913	IMP	UniProt	epidermal cell differentiation	1
GO:0048825	IGI	UniProt	cotyledon development	1
GO:0048497	IGI	Gene Ontology	maintenance of floral organ identity	1
GO:0009845	IMP	UniProt	seed germination	1 2
GO:0090627	IEA	PLAZA Integrative Orthology	plant epidermal cell differentiation	AT4G21750
GO:0031047	IEA	PLAZA Tree-based Orthology	gene silencing by RNA	AT4G25530
GO:0043481	IEA	PLAZA Tree-based Orthology	anthocyanin accumulation in tissues in response to UV light	AT4G00730
GO:0009909	IEA	PLAZA Tree-based Orthology	regulation of flower development	AT4G25530
GO:0009957	IEA	PLAZA Tree-based Orthology	epidermal cell fate specification	AT1G79840
GO:0006349	IEA	PLAZA Tree-based Orthology	regulation of gene expression by genetic imprinting	AT4G25530
GO:0009827	IEA	PLAZA Tree-based Orthology	plant-type cell wall modification	AT4G00730
GO:0048364	IEA	PLAZA Tree-based Orthology	root development	AT4G00730
GO:0009828	IEA	PLAZA Tree-based Orthology	plant-type cell wall loosening	AT1G73360
GO:0009911	IEA	PLAZA Tree-based Orthology	positive regulation of flower development	AT4G25530
GO:0042335	IEA	PLAZA Tree-based Orthology	cuticle development	AT4G00730
GO:0048765	IEA	PLAZA Tree-based Orthology	root hair cell differentiation	AT4G00730
GO:0010090	IEA	PLAZA Tree-based Orthology	trichome morphogenesis	AT1G05230
GO:0010091	IEA	PLAZA Tree-based Orthology	trichome branching	AT1G73360
GO:0010062	IEA	PLAZA Tree-based Orthology	negative regulation of trichoblast fate specification	AT1G79840

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0008289	IEA	UniProt	lipid binding	1
GO:0003677	IDA, IPI, ISS, IEA,	UniProt	DNA binding	1 2 3 4
GO:0043565	IEA	UniProt	sequence-specific DNA binding	1
GO:0003700	ISS	UniProt	transcription factor activity, sequence-specific DNA binding	1
GO:0005515	IPI	Gene Ontology	protein binding	1 2
GO:0000976	IEA	PLAZA Tree-based Orthology	transcription regulatory region sequence-specific DNA binding	AT1G73360
GO:0042803	IEA	PLAZA Tree-based Orthology	protein homodimerization activity	AT4G25530

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IDA, ISS,	UniProt	nucleus	1 2 3

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR023393	START-like domain
IPR002913	START domain
IPR001356	Homeobox domain
IPR017970	Homeobox, conserved site
IPR009057	Homeobox domain-like

Mapman id	Description
15.5.3.3	.RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (HD-ZIP IV)

No SignalP domains detected for this gene.