PLAZA 4.0 Monocots gene overview : AT3G62740

Gene: AT3G62740 (Arabidopsis thaliana)

Overview

Gene Identifier: AT3G62740
Transcript Identifier: AT3G62740.1
Gene Type: Coding gene
Location: Chr3 : 23211416-23213888 : positive

Family

Gene family: HOM04M000089
(940 genes in 28 species)
specific family
Subfamily: ORTHO04M000042
(839 genes in 28 species)
specific family
Duplication type: Tandem duplicate and Block duplicate

Descriptions

Description: beta glucosidase 7

Identifiers

Type	Value
symbol	BGLU7
tid	AT3G62740.1
UniProt	Q9LZJ1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0005975	IEA	UniProt	carbohydrate metabolic process	1
GO:1901657	IBA	UniProt	glycosyl compound metabolic process	1
GO:0080167	IEA	PLAZA Integrative Orthology	response to karrikin	AT1G60090
GO:0046283	IEA	PLAZA Integrative Orthology	anthocyanin-containing compound metabolic process	AT4G27830

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004553	IEA, ISS,	UniProt	hydrolase activity, hydrolyzing O-glycosyl compounds	1 2
GO:0008422	IBA	UniProt	beta-glucosidase activity	1
GO:0102483	IEA	UniProt	scopolin beta-glucosidase activity	1

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005773	IEA	PLAZA Integrative Orthology	vacuole	AT4G27830
GO:0005777	IEA	PLAZA Integrative Orthology	peroxisome	AT4G27820

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001360	Glycoside hydrolase family 1
IPR033132	Glycosyl hydrolases family 1, N-terminal conserved site
IPR017853	Glycoside hydrolase superfamily

Mapman id	Description
50.3.2	.Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase

No SignalP domains detected for this gene.