PLAZA 4.0 Monocots gene overview : AT3G62610

Gene: AT3G62610 (Arabidopsis thaliana)

Overview

Gene Identifier: AT3G62610
Transcript Identifier: AT3G62610.1
Gene Type: Coding gene
Location: Chr3 : 23154758-23156371 : positive

Family

Gene family: HOM04M000010
(3187 genes in 28 species)
specific family

Descriptions

Description: myb domain protein 11

Curated Summary: Member of the R2R3 factor gene family.

Identifiers

Type	Value
Alias	ATMYB11,myb domain protein 11,PFG2,PRODUCTION OF FLAVONOL GLYCOSIDES 2
symbol	MYB11
tid	AT3G62610.1
UniProt	Q9LZK4

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006351	IEA	UniProt	transcription, DNA-templated	1
GO:0006357	IBA	UniProt	regulation of transcription from RNA polymerase II promoter	1
GO:0007275	IEA	UniProt	multicellular organism development	1
GO:0030154	IBA	UniProt	cell differentiation	1
GO:0045893	IBA	UniProt	positive regulation of transcription, DNA-templated	1
GO:0051555	IMP	UniProt	flavonol biosynthetic process	1
GO:0008285	IMP	UniProt	negative regulation of cell proliferation	1 2
GO:0048640	IMP	UniProt	negative regulation of developmental growth	1 2
GO:0009416	IEP	UniProt	response to light stimulus	1 2
GO:0010224	IMP	UniProt	response to UV-B	1 2
GO:1900386	IMP	UniProt	positive regulation of flavonol biosynthetic process	1 2
GO:0006355	ISS	Gene Ontology	regulation of transcription, DNA-templated	1
GO:0009733	IEA	PLAZA Integrative Orthology	response to auxin	AT2G47460
GO:0009723	IEA	PLAZA Integrative Orthology	response to ethylene	AT2G47460
GO:0009813	IEA	PLAZA Integrative Orthology	flavonoid biosynthetic process	AT2G47460
GO:0009651	IEA	PLAZA Integrative Orthology	response to salt stress	AT2G47460

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	ISS, IEA	Gene Ontology	DNA binding	1
GO:0000981	IBA	UniProt	RNA polymerase II transcription factor activity, sequence-specific DNA binding	1
GO:0001135	IBA	UniProt	transcription factor activity, RNA polymerase II transcription factor recruiting	1
GO:0043565	IBA	UniProt	sequence-specific DNA binding	1
GO:0044212	IBA	UniProt	transcription regulatory region DNA binding	1
GO:0003700	ISS	UniProt	transcription factor activity, sequence-specific DNA binding	1

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IBA, ISM,	UniProt	nucleus	1 2

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox domain-like

Mapman id	Description
15.5.2.1	.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)

No SignalP domains detected for this gene.