PLAZA 4.0 Monocots gene overview : AT3G53130

Gene: AT3G53130 (Arabidopsis thaliana)

Overview

Gene Identifier: AT3G53130
Transcript Identifier: AT3G53130.1
Gene Type: Coding gene
Location: Chr3 : 19692812-19695278 : positive

Family

Gene family: HOM04M000062
(1231 genes in 29 species)
specific family
Subfamily: ORTHO04M002056
(79 genes in 29 species)
specific family

Descriptions

Description: Cytochrome P450 superfamily protein

Curated Summary: Lutein-deficient 1 (LUT1) required for lutein biosynthesis, member of the xanthophyll class of carotenoids. Involved in epsilon ring hydroxylation. Maps at 67.3 cM on chromosome 3.

Identifiers

Type	Value
Alias	CYP97C1,CYTOCHROME P450 97C1
full_name	LUTEIN DEFICIENT 1
symbol	LUT1
tid	AT3G53130.1
UniProt	Q6TBX7

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0055114	IEA	InterPro	oxidation-reduction process
GO:0016117	IMP	UniProt	carotenoid biosynthetic process	1

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005506	IEA	UniProt	iron ion binding
GO:0016705	IEA	InterPro	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	IEA	UniProt	heme binding
GO:0019825	ISS	Gene Ontology	oxygen binding	1
GO:0009974	IMP	UniProt	zeinoxanthin epsilon hydroxylase activity	1

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009941	IDA	UniProt	chloroplast envelope	1
GO:0009507	IDA, TAS,	UniProt	chloroplast	1 2
GO:0031969	IEA	UniProt	chloroplast membrane

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001128	Cytochrome P450
IPR002401	Cytochrome P450, E-class, group I
IPR017972	Cytochrome P450, conserved site

Mapman id	Description
9.1.6.2.1.3	.Secondary metabolism.terpenoids.carotenoid biosynthesis.xanthophylls.carotenoid hydroxylase activities.carotenoid epsilon-ring hydroxylase (LUT1)

No SignalP domains detected for this gene.