PLAZA 4.0 Monocots gene overview : AT3G53110

Gene: AT3G53110 (Arabidopsis thaliana)

Overview

Gene Identifier: AT3G53110
Transcript Identifier: AT3G53110.1
Gene Type: Coding gene
Location: Chr3 : 19687968-19690423 : positive

Family

Gene family: HOM04M000027
(1841 genes in 29 species)
specific family
Subfamily: ORTHO04M003873
(51 genes in 28 species)
specific family

Descriptions

Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein

Curated Summary: Encodes a putative DEAD-Box RNA Helicase and has RNA-dependent ATPase activity. Mutant is Sensitive to chilling stress and heat stress. Germination of the mutant is inhibited by ABA. LOS4 may be involved in temperature sensing. Is enriched in the nuclear envelope and also located in the cytoplasm. LOS4 is involved in export of poly A RNA.

Identifiers

Type	Value
full_name	LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4
symbol	LOS4
tid	AT3G53110.1
UniProt	Q93ZG7

Toolbox

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0010501	IBA	UniProt	RNA secondary structure unwinding	1
GO:0009409	IMP	UniProt	response to cold	1
GO:0009408	IMP	UniProt	response to heat	1
GO:0009737	IMP	UniProt	response to abscisic acid	1
GO:0016973	IDA	UniProt	poly(A)+ mRNA export from nucleus	1

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0005524	IEA	UniProt	ATP binding	1
GO:0003723	IEA	UniProt	RNA binding	1
GO:0004004	IBA	UniProt	ATP-dependent RNA helicase activity	1
GO:0008026	ISS	Gene Ontology	ATP-dependent helicase activity	1
GO:0003724	ISS	UniProt	RNA helicase activity	1
GO:0008186	IDA	UniProt	RNA-dependent ATPase activity	1

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	ISM	Gene Ontology	nucleus	1
GO:0005635	IDA	UniProt	nuclear envelope	1
GO:0005737	IDA	UniProt	cytoplasm	1
GO:0005886	IDA	UniProt	plasma membrane	1
GO:0005829	RCA	Gene Ontology	cytosol	1
GO:0005730	IBA	UniProt	nucleolus

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001650	Helicase, C-terminal
IPR011545	DEAD/DEAH box helicase domain
IPR014001	Helicase superfamily 1/2, ATP-binding domain
IPR014014	RNA helicase, DEAD-box type, Q motif
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Mapman id	Description
16.11.3.1	.RNA processing.messenger ribonucleoparticle (mRNP) export.mRNP remodeling.ATP-dependent helicase (DBP5/LOS4)

No SignalP domains detected for this gene.