PLAZA 4.0 Monocots gene overview : AT3G47600

Gene: AT3G47600 (Arabidopsis thaliana)

Overview

Gene Identifier: AT3G47600
Transcript Identifier: AT3G47600.1
Gene Type: Coding gene
Location: Chr3 : 17539627-17541035 : negative

Family

Gene family: HOM04M000010
(3187 genes in 28 species)
specific family

Descriptions

Description: myb domain protein 94

Curated Summary: Encodes a putative transcription factor (MYB94).

Identifiers

Type	Value
Alias	ATMYB94,myb domain protein 94,ATMYBCP70
symbol	MYB94
tid	AT3G47600.1
UniProt	Q9SN78

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006357	IBA	UniProt	regulation of transcription from RNA polymerase II promoter	1
GO:0030154	IBA	UniProt	cell differentiation	1
GO:0006355	TAS	UniProt	regulation of transcription, DNA-templated	1
GO:0009651	IEP	UniProt	response to salt stress	1
GO:0009723	IEP	UniProt	response to ethylene	1
GO:0009733	IEP	UniProt	response to auxin	1
GO:0009737	IEP	UniProt	response to abscisic acid	1
GO:0009751	IEP	UniProt	response to salicylic acid	1
GO:0009753	IEP	UniProt	response to jasmonic acid	1
GO:0046686	IEP	UniProt	response to cadmium ion	1
GO:0080167	IEP	UniProt	response to karrikin	1
GO:0009739	IEA	PLAZA Integrative Orthology	response to gibberellin	AT1G74650
GO:0010468	IEA	PLAZA Integrative Orthology	regulation of gene expression	AT5G62470
GO:0010200	IEA	PLAZA Integrative Orthology	response to chitin	AT1G74650
GO:0009414	IEA	PLAZA Integrative Orthology	response to water deprivation	AT5G62470
GO:0010025	IEA	PLAZA Integrative Orthology	wax biosynthetic process	AT5G62470

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	IEA, ISS,	UniProt	DNA binding	1 2
GO:0000981	IBA	UniProt	RNA polymerase II transcription factor activity, sequence-specific DNA binding	1
GO:0001135	IBA	UniProt	transcription factor activity, RNA polymerase II transcription factor recruiting	1
GO:0043565	IBA	UniProt	sequence-specific DNA binding	1
GO:0044212	IBA	UniProt	transcription regulatory region DNA binding	1
GO:0003700	ISS	UniProt	transcription factor activity, sequence-specific DNA binding	1

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IBA, ISM,	UniProt	nucleus	1 2

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox domain-like

Mapman id	Description
15.5.2.1	.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)

No SignalP domains detected for this gene.