Gene: AT3G44750 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT3G44750
Transcript Identifier
AT3G44750.1
Gene Type
Coding gene
Location
Chr3 : 16298045-16299585 : positive

Family

Gene family
HOM04M001820
(84 genes in 26 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
histone deacetylase 3
Curated Summary
Encodes a histone deacetylase. Controls the development of adaxial/abaxial leaf polarity. Two lines with RNAi-directed against this gene show reduced Agrobacterium-mediated DNA transformation of the roots.
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Identifiers

Type Value
AliasATHD2A,HD2A,HISTONE DEACETYLASE 2A,HDT1
symbolHDA3
tidAT3G44750.1
UniProtQ9FVE6

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006351 IEAUniProttranscription, DNA-templated1
GO:0006355 IEAUniProtregulation of transcription, DNA-templated1
GO:0016569 IEAUniProtcovalent chromatin modification1
GO:0009944 IMPUniProtpolarity specification of adaxial/abaxial axis1
GO:0009294 IMPUniProtDNA mediated transformation1
GO:0010162 IEPUniProtseed dormancy process1
GO:0009737 IEAPLAZA Tree-based Orthologyresponse to abscisic acidAT5G03740
GO:0045892 IEAPLAZA Integrative Orthologynegative regulation of transcription, DNA-templatedAT5G22650
GO:0009651 IEAPLAZA Tree-based Orthologyresponse to salt stressAT5G03740
GO:0030422 IEAPLAZA Tree-based Orthologyproduction of siRNA involved in RNA interferenceAT2G27840
GO:0009414 IEAPLAZA Tree-based Orthologyresponse to water deprivationAT5G03740

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003676 IEA, ISS, UniProtnucleic acid binding1 2
GO:0008270 ISSGene Ontologyzinc ion binding1
GO:0016787 IEAUniProthydrolase activity1
GO:0046872 IEAUniProtmetal ion binding1
GO:0004407 ISSGene Ontologyhistone deacetylase activity1
GO:0043565 IEAPLAZA Tree-based Orthologysequence-specific DNA bindingAT5G03740

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 ISMGene Ontologynucleus1
GO:0005730 IDA, TAS, UniProtnucleolus1 2
GO:0005618 IEAPLAZA Integrative Orthologycell wallAT5G22650
GO:0005739 IEAPLAZA Integrative OrthologymitochondrionAT5G22650
GO:0005829 IEAPLAZA Integrative OrthologycytosolAT5G22650
GO:0005774 IEAPLAZA Integrative Orthologyvacuolar membraneAT5G22650

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR013087Zinc finger C2H2-type

Mapman id Description
12.3.2.2.Chromatin organisation.histone modifications.histone deacetylation.HD2 histone deacetylase
No SignalP domains detected for this gene.