Gene: AT3G44680 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT3G44680
Transcript Identifier
AT3G44680.1
Gene Type
Coding gene
Location
Chr3 : 16226769-16229752 : negative

Family

Gene family
HOM04M000721
(181 genes in 29 species)
specific family
Subfamily
ORTHO04M000710
(155 genes in 29 species)
specific family
Duplication type
Tandem duplicate

Descriptions

Description
histone deacetylase 9
Curated Summary
Class I RPD3 type protein
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Identifiers

Type Value
AliasAtHDA9,HDA09
symbolHDA9
tidAT3G44680.1
UniProtQ8H0W2

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0016575 ISS, IEAGene Ontologyhistone deacetylation1
GO:0006351 IEAUniProttranscription, DNA-templated1
GO:0006355 IEAUniProtregulation of transcription, DNA-templated1
GO:0010187 IMPUniProtnegative regulation of seed germination1 2
GO:1900055 IMPUniProtregulation of leaf senescence1 2
GO:1990619 IMPUniProthistone H3-K9 deacetylation1 2

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004407 ISS, IEAGene Ontologyhistone deacetylase activity1
GO:0032041 IEAUniProtNAD-dependent histone deacetylase activity (H3-K14 specific)1
GO:0005515 IPIGene Ontologyprotein binding1 2
GO:0043565 IDAUniProtsequence-specific DNA binding1 2

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IEA, ISM, ISS, UniProtnucleus1 2 3

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR023801Histone deacetylase domain
IPR000286Histone deacetylase superfamily
IPR003084Histone deacetylase

Mapman id Description
12.3.2.1.1.Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase
12.3.2.1.4.1.Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.HDA9-PWR deacetylation complex.component HDA9
No SignalP domains detected for this gene.