Gene: AT3G24440 (Arabidopsis thaliana)

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Gene Identifier
AT3G24440
Transcript Identifier
AT3G24440.1
Gene Type
Coding gene
Location
Chr3 : 8876207-8878171 : negative

Family

Gene family
HOM04M001161
(123 genes in 25 species)
specific family

Descriptions

Description
Fibronectin type III domain-containing protein
Curated Summary
Encodes Vernalization Insensitive 3-like 1 (VIL1). VIL1 is involved in the photoperiod and vernalization of Arabidopsis by regulating expression of the related floral repressors Flowering Locus C (FLC) and Flowering Locus M (FLM). VIL1, along with VIN3 (Vernalization Insensitive 3) is necessary for the chromatin modification to FLC and FLM.
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Identifiers

Type Value
AliasVIL1,VIN3-LIKE 1
full_nameVERNALIZATION 5
symbolVRN5
tidAT3G24440.1
UniProtQ9LHF5

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006351 IEAUniProttranscription, DNA-templated1
GO:0006355 IEAUniProtregulation of transcription, DNA-templated1
GO:0009908 IEAUniProtflower development1
GO:0009409 IEPUniProtresponse to cold1
GO:0009909 IGIGene Ontologyregulation of flower development1
GO:0010048 IMPUniProtvernalization response1
GO:0016571 IMPUniProthistone methylation1
GO:0031062 IMPUniProtpositive regulation of histone methylation1
GO:0048572 IMPUniProtshort-day photoperiodism1
GO:0048575 IMPUniProtshort-day photoperiodism, flowering1
GO:0045814 IMPUniProtnegative regulation of gene expression, epigenetic1
GO:0051571 IMPUniProtpositive regulation of histone H3-K4 methylation1
GO:0061087 IMPUniProtpositive regulation of histone H3-K27 methylation1
GO:0070417 IEAPLAZA Tree-based Orthologycellular response to coldAT5G57380
GO:0010228 IEAPLAZA Tree-based Orthologyvegetative to reproductive phase transition of meristemAT4G30200
GO:1900111 IEAPLAZA Tree-based Orthologypositive regulation of histone H3-K9 dimethylationAT4G30200
GO:0048587 IEAPLAZA Tree-based Orthologyregulation of short-day photoperiodism, floweringAT4G30200
GO:0001666 IEAPLAZA Tree-based Orthologyresponse to hypoxiaAT5G57380
GO:0032922 IEAPLAZA Tree-based Orthologycircadian regulation of gene expressionAT4G30200

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515 IPI, IEAGene Ontologyprotein binding1
GO:0046872 IEAUniProtmetal ion binding1
GO:0035064 IEAPLAZA Tree-based Orthologymethylated histone bindingAT4G30200
GO:0042802 IEAPLAZA Tree-based Orthologyidentical protein bindingAT4G30200

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IDA, ISM, UniProtnucleus1 2
GO:0016607 IDAUniProtnuclear speck1
GO:0005677 IDAUniProtchromatin silencing complex1
GO:0031519 IEAPLAZA Tree-based OrthologyPcG protein complexAT4G30200
GO:0009506 IEAPLAZA Tree-based OrthologyplasmodesmaAT4G30200

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR003961Fibronectin type III
IPR013783Immunoglobulin-like fold
IPR032881Oberon, PHD finger domain

Mapman id Description
12.3.3.1.2.2.Chromatin organisation.histone modifications.histone lysine methylation.PRC2 histone methylation complex.associated protein factors.PRC2-VRN-interacting PHD protein (VIN3|VRN5)
No SignalP domains detected for this gene.