Gene: AT3G22680 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT3G22680
Transcript Identifier
AT3G22680.1
Gene Type
Coding gene
Location
Chr3 : 8019785-8020374 : positive

Family

Gene family
HOM04M003481
(49 genes in 28 species)
specific family
Subfamily
ORTHO04M009921
(20 genes in 15 species)
specific family

Descriptions

Description
RNA-DIRECTED DNA METHYLATION 1
Curated Summary
Encodes RNA-DIRECTED DNA METHYLATION 1 (RDM1), forming a complex with DMS3 (AT3G49250) and DRD1 (AT2G16390). This complex is termed DDR. The DDR complex is required for polymerase V transcripts and RNA-directed DNA methylation.
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Identifiers

Type Value
symbolRDM1
tidAT3G22680.1
UniProtQ9LUJ3

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0044030 IMP, IEA, UniProtregulation of DNA methylation1
GO:0006306 IGIUniProtDNA methylation1
GO:0070918 IMPUniProtproduction of small RNA involved in gene silencing by RNA1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677 IEAUniProtDNA binding1
GO:0005515 IPIGene Ontologyprotein binding1
GO:0043621 IDAUniProtprotein self-association1

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IDA, ISM, IEA, UniProtnucleus1 2
GO:0005654 IEAUniProtnucleoplasm1
GO:0000419 IMPUniProtDNA-directed RNA polymerase V complex1 2

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR015270Protein RDM1

Mapman id Description
12.5.1.14.3.Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.DNA methylation accessory complex (DDR).component RDM1
No SignalP domains detected for this gene.