PLAZA 4.0 Monocots gene overview : AT3G18000

Gene: AT3G18000 (Arabidopsis thaliana)

Overview

Gene Identifier: AT3G18000
Transcript Identifier: AT3G18000.1
Gene Type: Coding gene
Location: Chr3 : 6154578-6157331 : positive

Family

Gene family: HOM04M002101
(75 genes in 28 species)
specific family
Duplication type: Block duplicate

Descriptions

Description: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Curated Summary: Arabidopsis thaliana N-methyltransferase-like protein mRNA. Reduce transmission through pollen.

Identifiers

Type	Value
Alias	NMT1,N-METHYLTRANSFERASE 1,PEAMT
full_name	XIPOTL 1
symbol	XPL1
tid	AT3G18000.1
UniProt	Q9FR44

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0008152	IEA	InterPro	metabolic process
GO:0006656	IEA, IGI,	UniProt	phosphatidylcholine biosynthetic process	1 2
GO:0032259	IEA	Gene Ontology	methylation	1
GO:0009555	IMP	UniProt	pollen development	1
GO:0009826	IMP	UniProt	unidimensional cell growth	1
GO:0042425	IMP	UniProt	choline biosynthetic process	1
GO:0048528	IMP	UniProt	post-embryonic root development	1
GO:0009860	IMP	UniProt	pollen tube growth	1
GO:0010183	IMP	UniProt	pollen tube guidance	1

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0008168	ISS, IEA,	UniProt	methyltransferase activity	1
GO:0000234	IEA, IGI, ISS,	UniProt	phosphoethanolamine N-methyltransferase activity	1 2 3
GO:0052667	IEA	PLAZA Integrative Orthology	phosphomethylethanolamine N-methyltransferase activity	AT1G48600

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005737	ISS, ISM,	UniProt	cytoplasm	1 2
GO:0005829	IDA	UniProt	cytosol	1

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR013216	Methyltransferase type 11
IPR025771	Phosphoethanolamine N-methyltransferase
IPR029063	S-adenosyl-L-methionine-dependent methyltransferase

Mapman id	Description
5.2.4.1	.Lipid metabolism.glycerolipid biosynthesis.phosphatidylcholine.phospho-base N-methyltransferase

No SignalP domains detected for this gene.