PLAZA 4.0 Monocots gene overview : AT3G17600

Gene: AT3G17600 (Arabidopsis thaliana)

Overview

Gene Identifier: AT3G17600
Transcript Identifier: AT3G17600.1
Gene Type: Coding gene
Location: Chr3 : 6020281-6021040 : negative

Family

Gene family: HOM04M000122
(709 genes in 27 species)
specific family
Subfamily: ORTHO04M000070
(641 genes in 27 species)
specific family

Descriptions

Description: indole-3-acetic acid inducible 31

Curated Summary: Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA31 shares several residues with the conserved domain II region, believed to act as a degron in many of the rapidly degraded Aux/IAA family members. An IAA31 fusion protein is quite long-lived, but can be degraded more rapidly in the presence of auxin. Unlike many other family members, IAA31 transcript levels do not rise in response to auxin. Nevertheless, overexpression of IAA31 leads to defects in auxin-related processes such as gravitropism, root development, shoot development, and cotyledon vascular development.

Identifiers

Type	Value
symbol	IAA31
tid	AT3G17600.1
UniProt	Q8H174

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006355	IEA	UniProt	regulation of transcription, DNA-templated	1
GO:0006351	IEA	UniProt	transcription, DNA-templated	1
GO:0009734	IEA	UniProt	auxin-activated signaling pathway	1
GO:0009733	TAS	UniProt	response to auxin	1
GO:0009630	IMP	UniProt	gravitropism	1
GO:0048364	IMP	UniProt	root development	1
GO:0048367	IMP	UniProt	shoot system development	1
GO:0010200	IEA	PLAZA Tree-based Orthology	response to chitin	AT1G04100
GO:0010205	IEA	PLAZA Tree-based Orthology	photoinhibition	AT3G16500
GO:0010600	IEA	PLAZA Tree-based Orthology	regulation of auxin biosynthetic process	Solyc09g090910.1
GO:0045040	IEA	PLAZA Tree-based Orthology	protein import into mitochondrial outer membrane	AT4G29080
GO:0009737	IEA	PLAZA Tree-based Orthology	response to abscisic acid	AT3G16500
GO:0006109	IEA	PLAZA Tree-based Orthology	regulation of carbohydrate metabolic process	AT4G29080
GO:0006626	IEA	PLAZA Tree-based Orthology	protein targeting to mitochondrion	AT4G29080
GO:0060777	IEA	PLAZA Tree-based Orthology	compound leaf morphogenesis	Solyc04g076850.2
GO:0009745	IEA	PLAZA Tree-based Orthology	sucrose mediated signaling	AT3G16500
GO:0006950	IEA	PLAZA Tree-based Orthology	response to stress	Solyc04g076850.2
GO:0009867	IEA	PLAZA Tree-based Orthology	jasmonic acid mediated signaling pathway	AT3G16500
GO:0080167	IEA	PLAZA Tree-based Orthology	response to karrikin	AT4G29080
GO:1901332	IEA	PLAZA Tree-based Orthology	negative regulation of lateral root development	AT2G22670
GO:0010051	IEA	PLAZA Tree-based Orthology	xylem and phloem pattern formation	AT1G04550
GO:0080086	IEA	PLAZA Tree-based Orthology	stamen filament development	AT3G15540
GO:0010252	IEA	PLAZA Tree-based Orthology	auxin homeostasis	Solyc12g096980.1
GO:0010311	IEA	PLAZA Tree-based Orthology	lateral root formation	AT2G22670
GO:0010114	IEA	PLAZA Tree-based Orthology	response to red light	AT4G32280
GO:0016036	IEA	PLAZA Tree-based Orthology	cellular response to phosphate starvation	AT3G16500
GO:0009408	IEA	PLAZA Tree-based Orthology	response to heat	Solyc12g096980.1
GO:0009409	IEA	PLAZA Tree-based Orthology	response to cold	AT3G16500
GO:0009414	IEA	PLAZA Tree-based Orthology	response to water deprivation	Solyc03g121060.2
GO:0009611	IEA	PLAZA Tree-based Orthology	response to wounding	AT3G23050
GO:0009651	IEA	PLAZA Tree-based Orthology	response to salt stress	AT3G16500
GO:0010102	IEA	PLAZA Tree-based Orthology	lateral root morphogenesis	AT4G14550
GO:0010224	IEA	PLAZA Tree-based Orthology	response to UV-B	AT3G16500
GO:0031540	IEA	PLAZA Tree-based Orthology	regulation of anthocyanin biosynthetic process	AT3G16500
GO:0010588	IEA	PLAZA Tree-based Orthology	cotyledon vascular tissue pattern formation	AT2G46990
GO:0031542	IEA	PLAZA Tree-based Orthology	positive regulation of anthocyanin biosynthetic process	AT3G16500
GO:0019430	IEA	PLAZA Tree-based Orthology	removal of superoxide radicals	AT3G16500
GO:0009718	IEA	PLAZA Tree-based Orthology	anthocyanin-containing compound biosynthetic process	AT3G16500
GO:0009723	IEA	PLAZA Tree-based Orthology	response to ethylene	AT3G16500
GO:0009647	IEA	PLAZA Tree-based Orthology	skotomorphogenesis	AT2G46990
GO:0009880	IEA	PLAZA Tree-based Orthology	embryonic pattern specification	AT1G04550
GO:0010154	IEA	PLAZA Tree-based Orthology	fruit development	Solyc04g076850.2
GO:0050832	IEA	PLAZA Tree-based Orthology	defense response to fungus	AT3G16500
GO:0010930	IEA	PLAZA Tree-based Orthology	negative regulation of auxin mediated signaling pathway	Solyc04g076850.2
GO:0010218	IEA	PLAZA Tree-based Orthology	response to far red light	AT4G32280
GO:0045892	IEA	PLAZA Tree-based Orthology	negative regulation of transcription, DNA-templated	AT1G04550
GO:0009704	IEA	PLAZA Tree-based Orthology	de-etiolation	AT1G52830
GO:0009628	IEA	PLAZA Tree-based Orthology	response to abiotic stimulus	Solyc03g121060.2
GO:0009555	IEA	PLAZA Tree-based Orthology	pollen development	AT2G01200
GO:1900057	IEA	PLAZA Tree-based Orthology	positive regulation of leaf senescence	AT1G04250
GO:0009753	IEA	PLAZA Tree-based Orthology	response to jasmonic acid	AT3G16500
GO:0009791	IEA	PLAZA Tree-based Orthology	post-embryonic development	Solyc09g065850.2
GO:0009793	IEA	PLAZA Tree-based Orthology	embryo development ending in seed dormancy	AT2G01200
GO:1902074	IEA	PLAZA Tree-based Orthology	response to salt	Solyc03g121060.2
GO:0010262	IEA	PLAZA Tree-based Orthology	somatic embryogenesis	AT3G62100

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IEA	InterPro	protein binding
GO:0003700	ISS	UniProt	transcription factor activity, sequence-specific DNA binding	1
GO:0042802	IEA	PLAZA Tree-based Orthology	identical protein binding	AT1G04250
GO:0003993	IEA	PLAZA Tree-based Orthology	acid phosphatase activity	AT3G16500
GO:0043565	IEA	PLAZA Tree-based Orthology	sequence-specific DNA binding	AT5G65670
GO:0044212	IEA	PLAZA Tree-based Orthology	transcription regulatory region DNA binding	AT5G43700
GO:0008195	IEA	PLAZA Tree-based Orthology	phosphatidate phosphatase activity	AT3G16500
GO:0030943	IEA	PLAZA Tree-based Orthology	mitochondrion targeting sequence binding	AT4G29080

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IEA, ISM,	UniProt	nucleus	1 2
GO:0010287	IEA	PLAZA Tree-based Orthology	plastoglobule	AT3G16500
GO:0005739	IEA	PLAZA Tree-based Orthology	mitochondrion	AT4G29080
GO:0005737	IEA	PLAZA Tree-based Orthology	cytoplasm	AT2G22670
GO:0005740	IEA	PLAZA Tree-based Orthology	mitochondrial envelope	AT4G29080
GO:0009505	IEA	PLAZA Tree-based Orthology	plant-type cell wall	AT3G16500
GO:0009941	IEA	PLAZA Tree-based Orthology	chloroplast envelope	AT4G29080
GO:0010319	IEA	PLAZA Tree-based Orthology	stromule	AT3G16500
GO:0005768	IEA	PLAZA Tree-based Orthology	endosome	AT4G29080
GO:0031977	IEA	PLAZA Tree-based Orthology	thylakoid lumen	AT3G16500
GO:0005802	IEA	PLAZA Tree-based Orthology	trans-Golgi network	AT4G29080
GO:0005887	IEA	PLAZA Tree-based Orthology	integral component of plasma membrane	AT3G16500
GO:0009579	IEA	PLAZA Tree-based Orthology	thylakoid	AT3G16500
GO:0009535	IEA	PLAZA Tree-based Orthology	chloroplast thylakoid membrane	AT3G16500
GO:0009534	IEA	PLAZA Tree-based Orthology	chloroplast thylakoid	AT3G16500
GO:0009570	IEA	PLAZA Tree-based Orthology	chloroplast stroma	AT3G16500
GO:0005886	IEA	PLAZA Tree-based Orthology	plasma membrane	AT3G16500
GO:0005829	IEA	PLAZA Tree-based Orthology	cytosol	AT3G16500
GO:0009506	IEA	PLAZA Tree-based Orthology	plasmodesma	AT4G28640
GO:0009507	IEA	PLAZA Tree-based Orthology	chloroplast	AT3G16500
GO:0005794	IEA	PLAZA Tree-based Orthology	Golgi apparatus	AT4G29080

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR003311	AUX/IAA protein
IPR033389	AUX/IAA domain
IPR000270	PB1 domain

Mapman id	Description
35.1	not assigned.annotated

No SignalP domains detected for this gene.