PLAZA 4.0 Monocots gene overview : AT3G16180

Gene: AT3G16180 (Arabidopsis thaliana)

Overview

Gene Identifier: AT3G16180
Transcript Identifier: AT3G16180.1
Gene Type: Coding gene
Location: Chr3 : 5481477-5484943 : negative

Family

Gene family: HOM04M000017
(2169 genes in 29 species)
specific family
Subfamily: ORTHO04M000007
(1700 genes in 28 species)
specific family
Duplication type: Block duplicate

Descriptions

Description: Major facilitator superfamily protein

Curated Summary: Encodes a low affinity nitrate transporter that is expressed in the plasma membrane and found in the phloem of the major veins of leaves. It is responsible for nitrate redistribution to young leaves.

Identifiers

Type	Value
Alias	NRT1.12,nitrate transporter 1.12
tid	AT3G16180.1
UniProt	Q8LPL2

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006810	IEA	InterPro	transport
GO:0006857	ISS	Gene Ontology	oligopeptide transport	1
GO:0080055	IDA	Gene Ontology	low-affinity nitrate transport	1 2

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005215	ISS, IEA	Gene Ontology	transporter activity	1
GO:0080054	IDA	Gene Ontology	low-affinity nitrate transmembrane transporter activity	1 2

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0016020	ISS, IEA	Gene Ontology	membrane	1
GO:0005886	IDA, ISM	Gene Ontology	plasma membrane	1 2
GO:0016021	IEA	Gene Ontology	integral component of membrane	1

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR020846	Major facilitator superfamily domain
IPR000109	Proton-dependent oligopeptide transporter family

Mapman id	Description
24.2.2.9	.Solute transport.carrier-mediated transport.MFS superfamily.anion transporter (NRT1/PTR)

No SignalP domains detected for this gene.