Gene: AT3G16130 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT3G16130
Transcript Identifier
AT3G16130.1
Gene Type
Coding gene
Location
Chr3 : 5466246-5468512 : positive

Family

Gene family
HOM04M000336
(323 genes in 27 species)
specific family
Subfamily
ORTHO04M001489
(94 genes in 23 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
RHO guanyl-nucleotide exchange factor 13
Curated Summary
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
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Identifiers

Type Value
AliasATROPGEF13,PIRF2,phytochrome interacting RopGEF 2
full_nameROP (rho of plants) guanine nucleotide exchange factor 13
symbolROPGEF13
tidAT3G16130.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0080092 IEAPLAZA Tree-based Orthologyregulation of pollen tube growthAT4G38430
GO:0048364 IEAPLAZA Integrative Orthologyroot developmentAT1G52240
GO:0009664 IEAPLAZA Tree-based Orthologyplant-type cell wall organizationAT2G45890
GO:0080147 IEAPLAZA Integrative Orthologyroot hair cell developmentAT1G52240
GO:0048767 IEAPLAZA Tree-based Orthologyroot hair elongationAT2G45890
GO:0009793 IEAPLAZA Tree-based Orthologyembryo development ending in seed dormancyAT1G79860
GO:0009860 IEAPLAZA Tree-based Orthologypollen tube growthAT4G38430

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005089 ISS, IEA, UniProtRho guanyl-nucleotide exchange factor activity1
GO:0005515 IEAPLAZA Tree-based Orthologyprotein bindingAT2G45890
GO:0005085 IEAPLAZA Tree-based Orthologyguanyl-nucleotide exchange factor activityAT3G24620
GO:0042802 IEAPLAZA Tree-based Orthologyidentical protein bindingAT3G24620

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 ISMGene Ontologynucleus1
GO:0090406 IEAPLAZA Tree-based Orthologypollen tubeAT1G79860
GO:0016324 IEAPLAZA Tree-based Orthologyapical plasma membraneAT4G38430
GO:0005829 IEAPLAZA Tree-based OrthologycytosolAT5G02010
GO:0005737 IEAPLAZA Integrative OrthologycytoplasmAT1G52240
GO:0005886 IEAPLAZA Tree-based Orthologyplasma membraneAT2G45890
GO:0009531 IEAPLAZA Tree-based Orthologysecondary cell wallAT2G45890

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR005512PRONE domain

Mapman id Description
27.4.3.1.Multi-process regulation.Rop-GTPase regulatory system.RopGEF guanine nucleotide exchange factor activities.exchange factor (PRONE)
No SignalP domains detected for this gene.