PLAZA 4.0 Monocots gene overview : AT3G07970

Gene: AT3G07970 (Arabidopsis thaliana)

Overview

Gene Identifier: AT3G07970
Transcript Identifier: AT3G07970.1
Gene Type: Coding gene
Location: Chr3 : 2541006-2543370 : positive

Family

Gene family: HOM04M000090
(926 genes in 27 species)
specific family
Subfamily: ORTHO04M000273
(289 genes in 27 species)
specific family
Duplication type: Tandem duplicate

Descriptions

Description: Pectin lyase-like superfamily protein

Curated Summary: Required for pollen separation during normal development. In qrt mutants, the outer walls of the four meiotic products of the pollen mother cell are fused, and pollen grains are released in tetrads.May be required for cell type-specific pectin degradation.

Identifiers

Type	Value
full_name	QUARTET 2
symbol	QRT2
tid	AT3G07970.1
UniProt	Q9SFB7

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0005975	ISS, IEA	Gene Ontology	carbohydrate metabolic process	1
GO:0009830	TAS	UniProt	cell wall modification involved in abscission	1
GO:0009901	IMP	UniProt	anther dehiscence	1
GO:0010047	IMP	UniProt	fruit dehiscence	1
GO:0048235	IMP	UniProt	pollen sperm cell differentiation	1
GO:0045490	IMP	UniProt	pectin catabolic process	1
GO:0010227	IEA	PLAZA Tree-based Orthology	floral organ abscission	AT2G41850

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004650	IDA, ISSIEA,	UniProt	polygalacturonase activity	1 2

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005576	IEA, ISM,	UniProt	extracellular region	1 2
GO:0005618	IEA	UniProt	cell wall	1

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR012334	Pectin lyase fold
IPR000743	Glycoside hydrolase, family 28
IPR006626	Parallel beta-helix repeat
IPR011050	Pectin lyase fold/virulence factor

Mapman id	Description
21.3.5.1.1	.Cell wall organisation.pectin.modification and degradation.polygalacturonase activities.polygalacturonase (QRT2)

No SignalP domains detected for this gene.