PLAZA 4.0 Monocots gene overview : AT3G06490

Gene: AT3G06490 (Arabidopsis thaliana)

Overview

Gene Identifier: AT3G06490
Transcript Identifier: AT3G06490.1
Gene Type: Coding gene
Location: Chr3 : 2004298-2006358 : positive

Family

Gene family: HOM04M000010
(3187 genes in 28 species)
specific family
Duplication type: Block duplicate

Descriptions

Description: myb domain protein 108

Curated Summary: putative transcription factor MYB108 (MYB108) mRNA,

Identifiers

Type	Value
Alias	AtMYB108,myb domain protein 108,BOS1,BOTRYTIS-SUSCEPTIBLE1
symbol	MYB108
tid	AT3G06490.1
UniProt	Q9LDE1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006351	IEA	UniProt	transcription, DNA-templated	1
GO:0006357	IBA	UniProt	regulation of transcription from RNA polymerase II promoter	1
GO:0006952	IEA	UniProt	defense response	1
GO:0030154	IBA	UniProt	cell differentiation	1
GO:0006355	ISS	Gene Ontology	regulation of transcription, DNA-templated	1
GO:0009620	IMP	UniProt	response to fungus	1
GO:0009651	IEP	UniProt	response to salt stress	1
GO:0009723	IEP	UniProt	response to ethylene	1
GO:0009737	IEP	UniProt	response to abscisic acid	1
GO:0009753	IEP	UniProt	response to jasmonic acid	1
GO:1902074	IEA	PLAZA Integrative Orthology	response to salt	AT5G49620

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	ISS, IEA	Gene Ontology	DNA binding	1
GO:0000981	IBA	UniProt	RNA polymerase II transcription factor activity, sequence-specific DNA binding	1
GO:0001135	IBA	UniProt	transcription factor activity, RNA polymerase II transcription factor recruiting	1
GO:0044212	IBA	UniProt	transcription regulatory region DNA binding	1
GO:0003700	ISS	UniProt	transcription factor activity, sequence-specific DNA binding	1
GO:0043565	IPI	UniProt	sequence-specific DNA binding	1 2

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IDA, ISM,	UniProt	nucleus	1 2

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox domain-like

Mapman id	Description
15.5.2.1	.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)

No SignalP domains detected for this gene.