Gene: AT3G06480 (Arabidopsis thaliana)

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Gene Identifier
AT3G06480
Transcript Identifier
AT3G06480.2
Gene Type
Coding gene
Location
Chr3 : 1986710-1989666 : negative

Family

Gene family
HOM04M000027
(1841 genes in 29 species)
specific family
Subfamily
ORTHO04M001920
(82 genes in 28 species)
specific family

Descriptions

Description
DEAD box RNA helicase family protein
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Identifiers

Type Value
tidAT3G06480.2

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0000184 IEAGene Ontologynuclear-transcribed mRNA catabolic process, nonsense-mediated decay1
GO:0006364 IEAGene OntologyrRNA processing1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515 IEAInterProprotein binding
GO:0003676 IEAGene Ontologynucleic acid binding1
GO:0005524 IEA, ISSGene OntologyATP binding1 2
GO:0003723 IEAGene OntologyRNA binding1
GO:0004386 IEAGene Ontologyhelicase activity1
GO:0008026 ISSGene OntologyATP-dependent helicase activity1

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IEA, ISMGene Ontologynucleus1 2
GO:0016021 IEAGene Ontologyintegral component of membrane1
GO:0005773 IDAGene Ontologyvacuole1

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001650Helicase, C-terminal
IPR001202WW domain
IPR011545DEAD/DEAH box helicase domain
IPR000629ATP-dependent RNA helicase DEAD-box, conserved site
IPR014001Helicase superfamily 1/2, ATP-binding domain
IPR014014RNA helicase, DEAD-box type, Q motif
IPR027417P-loop containing nucleoside triphosphate hydrolase

Mapman id Description
35.1not assigned.annotated
No SignalP domains detected for this gene.