PLAZA 4.0 Monocots gene overview : AT2G41630

Gene: AT2G41630 (Arabidopsis thaliana)

Overview

Gene Identifier: AT2G41630
Transcript Identifier: AT2G41630.1
Gene Type: Coding gene
Location: Chr2 : 17355555-17357400 : negative

Family

Gene family: HOM04M001153
(123 genes in 29 species)
specific family
Subfamily: ORTHO04M001548
(93 genes in 29 species)
specific family
Duplication type: Block duplicate

Descriptions

Description: transcription factor IIB

Curated Summary: Encodes a transcription factor, TFIIB1, that plays important roles in pollen tube growth, guidance, and reception as well as endosperm development and is partially functionally different from AtTFIIB2 and AtTFIIB3/AtpBRP2.

Identifiers

Type	Value
Alias	AtTFIIB1,TFIIB1,transcription factor IIB 1
symbol	TFIIB
tid	AT2G41630.1
UniProt	P48512

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006355	IEA, ISS	Gene Ontology	regulation of transcription, DNA-templated	1 2
GO:0070897	IEA	Gene Ontology	DNA-templated transcriptional preinitiation complex assembly	1
GO:0009960	IMP	Gene Ontology	endosperm development	1
GO:0010183	IMP	Gene Ontology	pollen tube guidance	1
GO:0080092	IMP	Gene Ontology	regulation of pollen tube growth	1

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0017025	IEA	Gene Ontology	TBP-class protein binding	1
GO:0046872	IEA	Gene Ontology	metal ion binding	1
GO:0005515	IPI	Gene Ontology	protein binding	1 2

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IDA, ISM	Gene Ontology	nucleus	1 2

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR013763	Cyclin-like
IPR000812	Transcription factor TFIIB
IPR013150	Transcription factor TFIIB, cyclin-like domain
IPR013137	Zinc finger, TFIIB-type
IPR023486	Transcription factor TFIIB, conserved site

Mapman id	Description
15.3.5.2	.RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.basal transcription factor (TFIIb)

No SignalP domains detected for this gene.